Parus major (Great Tit): 107209821
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Entry
107209821 CDS
T04864
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
pmaj
Parus major (Great Tit)
Pathway
pmaj03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pmaj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
107209821 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmaj03400
]
107209821 (LIG4)
Enzymes [BR:
pmaj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
107209821 (LIG4)
DNA repair and recombination proteins [BR:
pmaj03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
107209821 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Tox-REase-9
Motif
Other DBs
NCBI-GeneID:
107209821
NCBI-ProteinID:
XP_015495411
LinkDB
All DBs
Position
1:34598428..34602640
Genome browser
AA seq
912 aa
AA seq
DB search
MASAPVPQPPPKKTVASHVPFAHLCSTLEQIQKCKSRPEKTKYFKVFLESWRKFHDALHQ
KEKDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPKDGKDAAKLLNYRTP
TGSRGDAGDFAMIAYFVLKPRSPKQGRLTIEQVNEHLDAIANNNAAKNKGQLKKSLLQLI
TQSTALEQKWLIRMIIKDLKLGVSQQTIFSIFHPDAAELHNVTTDLEKVCRQLHDPSVSL
SDVSIMLFSAFKPMLAAIADVQQIEKQMSNQTFYIETKLDGERMQMHKDGDVYKYFSRNG
FDYTQQFGASPLEGSLTPFIHNVFKSNIQNCILDGEMMAYNPETQTFMQKGNKFDIKRMV
EDSDLQTCFCVFDVLMVNDQKLGHEVLSKRYEILNSVFTPVKGRIHVVHKRNARTRKEVI
DALNEAIDNREEGIMVKDPMSTYKPDKRGEGWLKIKPEYVNGLMDELDLLIVGGYWGKGS
RGGMMSHFLCAVAETPPPNEKPTIFHSICRVGSGYTMKELYDLGLKLAKHWKPYHRKNPP
GNILCGTEKPEMYIEPCNSVIVQIKAAEIVDSDMYKTDCTLRFPRIEKIREDKEWYECMT
SDMLEDLRSKAQGKLASKHLPIDEYDEPHEKKRKTVSKVRKVIGIAEQFKAPDLSSVSKV
SNIFEDVEFCVMTGTRKYSKTELESRIAQCGGSVVQNPGPETYCVIVGAENVRVKNIIAS
NKYDVVRAEWLLQCFQTKMLVPWQPAFMIHMSPDTREHFAREYDCYGDSYTANTDVAQLK
EVFSRMKDNKAMPVDLIAELEERYWWNNCQLGIFRGNTVYVDCYAVVNEPESKIPGTTLS
IRALELRFYGAKVVSHLEEGVSHVVVGEDHSRVEEMKVLRRTFGKKFKIVSELWVAHSVE
EGVAENEYQYLV
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atggcttctgcacctgttccacagcctcctcctaaaaaaacggtggcctctcatgtgcct
tttgcacatctgtgttctactctggagcaaatacagaagtgcaaatctcgtccagagaaa
accaagtatttcaaggtttttctggaatcctggaggaagttccatgatgcgcttcatcaa
aaagagaaggatgtcacagattccttttacccggctatgcgacttattctcccacagttg
gaaagagagaggatggcatatggaattaaggaaactatgcttgcaaagctctatattgaa
ctgcttaatttaccaaaagatggaaaagatgctgcaaagcttttaaattacagaacacct
acaggctcacgtggagatgctggagattttgcaatgatcgcatactttgtgctaaaacct
aggagcccaaaacaaggcagactgacaatagaacaagtcaatgaacatttagatgcaata
gctaataacaatgctgctaaaaacaagggtcagttaaagaaaagtcttcttcagttaatt
acccagagcacagcactggaacaaaaatggcttatccgaatgattataaaggatctaaag
cttggtgttagtcaacaaactatattttctatttttcatcccgatgctgctgaattgcac
aatgttactaccgatttggaaaaagtttgcagacagctgcatgatccctctgtctcactt
agtgatgtttctatcatgttgttctctgcctttaaaccaatgcttgctgctattgcagat
gtccagcaaattgagaaacaaatgagtaaccagacattctacatagaaactaagctggat
ggtgaacgtatgcagatgcacaaagatggggatgtgtacaagtatttttcccgaaatggg
tttgactatactcagcagtttggtgcttcacccctagaaggttcgttaacgccatttatt
cataatgtatttaagagcaatatacaaaattgcattcttgatggtgaaatgatggcttac
aatcctgagacacaaacttttatgcaaaaaggaaacaaatttgacataaaaagaatggtg
gaggactctgatctgcagacctgcttctgtgtatttgatgtattgatggttaatgatcag
aagttgggccatgaagtactgagcaaaagatatgaaatcttaaatagtgtatttaccccg
gtaaagggcaggatacatgttgtccataagagaaatgccagaacaagaaaagaagtaatt
gatgctttaaatgaagcaatagataacagagaggaaggaattatggtgaaagatcccatg
tccacctacaagcctgacaaacgtggggaaggctggttaaaaatcaagccagaatatgtc
aatggactgatggatgaactggaccttttaattgttggtggttactgggggaaggggtct
cgtggtggaatgatgtctcattttctctgtgctgttgcggagacaccccctccaaatgaa
aaaccaaccattttccactccatatgtcgtgttggctctggctataccatgaaagagttg
tatgatctaggcttgaaactggctaaacactggaagccctaccataggaagaaccctcct
ggtaacattttgtgtggaactgaaaaacctgaaatgtacattgaaccttgcaactctgtc
atagttcagatcaaggcagctgagattgttgacagtgatatgtacaaaactgactgtact
ttgagattcccccgaattgagaagataagggaagacaaagaatggtacgagtgcatgact
tcagacatgttagaagacctcaggagcaaagcacaaggaaagctggcatctaagcacctt
cctatagatgagtatgatgagccacatgagaaaaaaaggaaaactgtttcaaaggtgagg
aaggtaattggaatagccgagcaatttaaagctcctgatctttctagtgtaagcaaggtt
tcaaatatatttgaagatgttgagttttgtgttatgacaggaacaagaaaatactcaaag
actgagctggaaagcagaatagcccaatgtggtggcagtgtggtacagaacccggggccg
gagacatactgtgtcattgtaggagctgagaatgtcagagtgaaaaacatcattgcttct
aacaaatacgatgtggtgagggcagagtggctccttcagtgttttcaaaccaaaatgctg
gtgccttggcaaccagcctttatgattcacatgtctcctgacacaagagaacattttgct
cgtgagtatgattgttatggagacagttacacagcaaacacagatgttgcgcagctcaag
gaggtattctcaagaatgaaagacaataaggcaatgcctgtggacttgattgcagagcta
gaagaacgttattggtggaacaattgtcagcttggcatattcagaggaaacactgtttat
gtggactgttatgctgttgttaatgagcctgaaagcaaaatccctggaactacactatca
attagagctttggagctccgtttttatggtgcaaaagtagtttctcaccttgaagagggt
gtctcccatgttgttgtaggagaagatcattcacgggtagaagagatgaaagtgctcagg
aggacatttgggaaaaaatttaaaattgtatctgagctgtgggtagcacactcagtagag
gaaggagttgcagagaatgaatatcagtacttagtttaa
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