Parus major (Great Tit): 107212888
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Entry
107212888 CDS
T04864
Symbol
LIG3
Name
(RefSeq) DNA ligase 3 isoform X1
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
pmaj
Parus major (Great Tit)
Pathway
pmaj03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pmaj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
107212888 (LIG3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmaj03400
]
107212888 (LIG3)
Enzymes [BR:
pmaj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
107212888 (LIG3)
DNA repair and recombination proteins [BR:
pmaj03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
107212888 (LIG3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
Synaptonemal_3
aRib
Motif
Other DBs
NCBI-GeneID:
107212888
NCBI-ProteinID:
XP_015502208
Ensembl:
ENSPMJG00000018995
LinkDB
All DBs
Position
19:complement(4119343..4132957)
Genome browser
AA seq
1019 aa
AA seq
DB search
MPTGGRTLSHAARALCRGTALFCPRPQLPLPRPFSSSGGVSPGCWCPLLLPRVSGPSPKQ
RRAFPLSLLLGSWLRSACAAAEDMAEQRYCVDYAKRGTAGCKKCKEKIVKGMVRIGKIVP
NPFTESGGDMKEWYHVKCIFEKLDKARATTKKIEDITDLEGWEELQDEEKETINKYISEA
NSKTGGTPKKKVIVQAKLTATGQLTTKDPPKKFSGFTAKPKNSEDAPANSVHKPSLSAAR
CDPKHKDCLLREFRKLCAMVAEKPSYNVKTQIIQDFLRKGSAGDGFHGDVYLTIKMLLPG
VIKIVYNLNDKQIVKLFSRIFNCNQEEMVRDLEQGDVSETIRIFFEQSKTCPPAPKSLLT
IQEVDEFLIQLSKLTKEDDQQSVLQQISRRCTGNDLKCIIRLIKHDLKMNAGAKHVLDAL
DPNAYEAFKASRNLQDVVERVLQNQQESEKVPGLKRTLSVQASLMTPVQPMLAEACKSIE
YAMKKCPNGMYAEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAHFKDFIPQAFPGGQ
SMILDSEVLLIDNKTGKPLPFGTLGVHKKAAFQDANVCLFVFDCIYFNDISLMDRPLCER
RKFLHDNMVEIPNRILFSEMKHVTKASDLADMITRVIREGLEGLVLKDLKGNYEPGKRHW
LKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDPKSEKWCTVTKCSGGH
DDATLARLQTELDMVKISKDPSKIPRWLKINKIYYPDFIVPDPKKAPVWEITGAEFSKAE
AHTADGISIRFPRCTRIRDDKDWQTATNLQQLKELYQLSKEKADFSVTAGEEDESTAGSS
GENDGNSRSSTPHSSIKSPPSKSPAKAQKAEESKGVIGSPQKCEEKRGEKRKASEMEDNG
KKVQGGARTAARQGGGGRGSCSVHFHSKECFAQALLLLPPQQPLLDIFTGVRLYLAPSVK
DFDRIRRYFIAFDGDLVEEFDTASATHVIGDIDDNPGAQRVTPRWIWECIRKRRLVAPC
NT seq
3060 nt
NT seq
+upstream
nt +downstream
nt
atgcccacgggcggcaggacgctgtcacacgctgcccgcgctctctgcaggggcacagcg
ctgttctgccctcgcccacagctccccttgccccgaccgttctcctcctctggcggagtc
agccccggttgttggtgcccgctgctgctcccccgtgtctccgggccatccccgaagcag
cgccgcgcttttcccctctccctgctcttgggcagctggctgcgctcggcctgcgcggct
gcggaggacatggcagagcagcgctactgtgtggactatgccaagcggggcaccgcgggc
tgcaagaagtgcaaggagaagatcgtgaaggggatggtgcgcattgggaagatcgttccc
aatcctttcaccgagtccggaggggacatgaaggagtggtaccacgtcaagtgcatcttt
gagaagctggacaaagcccgggccaccaccaagaaaatcgaagacatcacagacttggag
gggtgggaagagctacaggatgaggagaaggaaacaatcaacaagtacatctcagaagcc
aattccaagactggaggtaccccgaagaaaaaggtgatagtgcaggcaaagctcactgcc
acaggacaactgaccacaaaagatccaccaaagaaattctctggattcactgccaagcca
aagaattcagaagatgcccctgcaaactctgtccacaaacccagcctgtctgcagccagg
tgtgatcccaagcacaaggattgcctgctgcgggaattccgcaagctctgtgccatggtg
gctgagaagccaagctacaacgtgaaaacacagatcatccaggacttcctcagaaaggga
tctgcaggagatggttttcatggtgatgtatacctgaccattaagatgctgttaccaggt
gtcattaaaatagtttacaacttgaatgataagcagattgtaaagctgttcagcaggatt
tttaactgcaaccaggaagaaatggtccgggacctggagcagggagatgtttccgagacc
atacggatcttcttcgagcagagcaagacctgtcctccagcacccaagagcctcctgacc
atccaggaggtcgatgaattcctcatccaactgtccaagctcaccaaggaggatgaccag
cagagtgtcctgcagcagatcagccgcaggtgtacgggcaatgacctgaagtgcatcatc
aggctaattaaacatgacttgaaaatgaatgctggagcaaagcacgtgttggacgctctg
gatcccaacgcctacgaggcgttcaaggcctcgcggaacctgcaggacgtggtggagcgg
gtgctgcagaaccagcaggagtctgagaaggtgccagggctgaagaggaccctgagcgtg
caggcctcactcatgaccccagtgcagcccatgctggctgaggcctgcaagtccatcgag
tacgccatgaagaagtgtcccaacgggatgtacgccgagatcaagtacgacggcgagcgc
gtgcaggtgcacaagaacggggatcacttcagctacttcagcaggagcctcaaacctgtg
ctcccccacaaagtagcccattttaaggatttcatcccccaggctttccctggtgggcaa
agtatgatcctggattcagaagttctcctgattgacaataaaactggcaagccacttcct
tttgggactcttggtgtgcacaagaaagctgctttccaggatgccaacgtttgcctgttt
gtgtttgactgcatctacttcaatgacatcagcctgatggacaggcccctgtgtgaacgg
cgcaagttcctgcacgacaacatggtggagatccccaacaggatcctgttctcagagatg
aaacacgtcacaaaagcttcagatctggcagacatgatcacccgagtcatccgggagggg
ctggaagggctggtgctgaaggatttaaagggaaattacgaaccagggaaacgccactgg
ctgaaggtgaagaaggattatctcaacgagggggcaatggctgacactgctgacctggtg
gtgctgggggctttctatggacagggcagtaaaggtggcatgatgtccatcttcctcatg
ggctgctacgaccccaagagtgagaagtggtgcacggtgaccaagtgctccggtggccac
gatgacgccacgctggcacgtctgcagacagagctggacatggtgaagatcagcaaggat
cctagtaaaattccaaggtggctaaaaattaacaaaatctactacccagacttcattgtc
ccagatccaaagaaagccccagtgtgggagatcaccggggctgagttctccaaggccgag
gcccacactgcggacgggatctccatccgcttcccgcgctgcacccgcatccgcgacgac
aaggactggcagacagccaccaacctgcagcagctgaaggagctgtaccagctctccaag
gagaaggctgatttcagtgttacagctggggaggaagacgagtccacagctggcagcagt
ggagagaatgatgggaattccaggtcttccacacctcacagcagtattaagagcccccca
agcaagtcacctgcaaaagcccagaaggcagaagagagcaaaggagtgattggatcccct
cagaaatgcgaggagaaacgaggggagaagagaaaagcatccgagatggaggacaatgga
aaaaaggtacaggggggggccaggacagcagcacggcagggcgggggaggccgaggcagt
tgctctgttcacttccattccaaggaatgttttgcccaagctctgcttctccttcccccc
cagcagccactgctggacattttcacgggggtgaggctctacctggcgccctccgtcaag
gactttgaccgaatccgccgctatttcatcgccttcgacggggacctggtggaggagttc
gacacggcctcggccacccacgtgattggggacattgatgacaaccccggggcgcagagg
gtgactcccaggtggatctgggagtgcatccggaagcgcaggctggtggccccgtgctag
DBGET
integrated database retrieval system
