Parus major (Great Tit): 107214033
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Entry
107214033 CDS
T04864
Symbol
SCAF4
Name
(RefSeq) SR-related and CTD-associated factor 4 isoform X1
KO
K13167
SR-related and CTD-associated factor 4
Organism
pmaj
Parus major (Great Tit)
Brite
KEGG Orthology (KO) [BR:
pmaj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmaj03021
]
107214033 (SCAF4)
03041 Spliceosome [BR:
pmaj03041
]
107214033 (SCAF4)
Transcription machinery [BR:
pmaj03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
107214033 (SCAF4)
Spliceosome [BR:
pmaj03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR proteins
107214033 (SCAF4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
107214033
NCBI-ProteinID:
XP_015504564
Ensembl:
ENSPMJG00000001545
LinkDB
All DBs
Position
1:113163237..113201084
Genome browser
AA seq
1105 aa
AA seq
DB search
MEAVNAFNQELFSLMEMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKV
PGLYVIDSIVRQSRHQFGTDKDVFGPRFSKNITATFQYLYLCPSEDKSKIVRVLNLWQKN
GVFKIEIIQPLLDMAAGTSATAPIAENATNNEGSPPPPAKVPSEAPQVTANSVPSVPQLP
SSDAFAAVAQLFQTTQGQQLQQILQTFQQPQKPQSPVIDNTVMAQVQAITAQLKTTAAQP
PEQKAAFTAPEQKTSFDKKLLDRFDYDDEPEAVEDSKKEDSAPSPSVSQPALTSLSFSAQ
AGWCSMPGGFPGEGMQQPVFPQLPNMDPFQQRMMGMQQDPMRHQVPLPPNGQMPGFGLLP
TPQFPPMAQPVMPPAAPVQPTFQSPFPVQAEPHLQKPHQQDMEVEQPPIQEGKRHVSDSR
KSRSRSASRSPKRRRSRSGSRSRRSRHRRSRSRDRRRHSPKSRSQERREHERERERRSKG
LPQIKSETVSVCSTTLWVGQLDKRTTQQDVGSLLEEFGPIESINMIPPRGCAYIVMVHRQ
DANRALQKLSRGNFKVNQKSIKIAWALNKGIKPDYKQYWDVELGVTYIPWDKVKPEDLES
FCEGGMLDNETLSPEWKGIPKKSENEVAQNGGAEAAHNEPVSPIPKALPVPIPVPMPAPI
TVPPPQVPPHPSGPPMVGALQPPAFTAPLGIPPPGFAPGVPPPPPPPFLRPGFNPLHLPP
GFLPPGPPPPITPPVSVPHTPAVNIPNSTATGGNEDATKESSVGNPIPTVVSGGRGNAES
TDTSKIYGTIPPPVAPTSVPAPVTQAVPLLGTQGVAPPPPAPVVGLQTPSTGLLGARPGL
IPLQRPPGMPPPPPLXPLQRPPGMPPPPPLPRFPMMPPRHMPPHMMHRGPPPGPGGFGMP
PPHGMKTPFPPPGHFVRPGGGPGGGGPGGGPEESRDGRQFRNDRQFTPSRDQERFGRRSF
GNRVENDRERYGGRDDREHERPGGRDRRDWGRRSPERDRHRDSEDRNRRSSGHRDRERDS
RDRESRRDKEETRGKEKPEVTDRAEGDKNHEPHGSKTEGAELVSELAAGDAEPAGAKPAP
ESASEATSSLDQADKDTGSAAEAPR
NT seq
3318 nt
NT seq
+upstream
nt +downstream
nt
atggaggccgtgaacgccttcaaccaagagctcttctcgctgatggagatgaaacctcct
atttcccgagccaagatgattctcatcacaaaagctgccattaaagctattaagctttat
aagcatgttgtccagattgtggagaagtttatcaaaaagtgcaagccggagtacaaagtc
ccgggcttgtacgtcatcgactccatcgttcggcagtctcggcaccagttcggaacagac
aaagatgtttttgggccaaggttctctaagaacattactgccacattccagtatttgtat
ctgtgtccatctgaagacaagagtaaaatagttcgtgtcctgaacctctggcagaaaaat
ggagtatttaaaattgaaataattcagcctctcttggatatggcagcaggaaccagtgcc
actgcacccatagcagagaatgctactaacaatgaaggttcgccgccccctccggccaag
gttccctcggaggccccgcaagtgaccgcgaactcagtgcccagcgtgccacagctgccc
agttctgatgcctttgcagctgtagcccagttgttccagacaacacaaggacaacagctc
cagcaaatcctgcagaccttccaacagcctcagaagccccagtcaccggtcatagacaac
actgtgatggctcaggttcaagctattactgctcagttgaaaaccacagcagcacagccc
ccagagcagaaagctgctttcacagcacctgagcagaaaacgtcgtttgacaaaaagctg
ctagatcggtttgactatgatgatgaaccagaagcagtggaagattcaaagaaagaagat
tcagctccttcaccttcagtgtctcagccggctttgacctctctctcattcagtgcacag
gctggatggtgctcaatgccgggtggttttccaggagaaggcatgcagcagccagtattt
cctcagctcccaaatatggatccttttcagcagcggatgatgggaatgcagcaggatccg
atgcggcaccaggtgccacttcctccgaatgggcagatgccgggctttggtctcctgcct
accccccagttcccacccatggctcagccagtgatgcctccagcagcgccagtgcagcca
actttccagtctcccttcccagtccaggctgagccacacctgcagaaaccccatcagcag
gatatggaagtggaacagccacccattcaggagggaaaaaggcatgtttccgacagtagg
aaatcaagatctagatctgcatcaaggtcccccaagaggagacgctcgcggtcgggctcg
cgctcgcggcgctcgcggcaccggcgctcgcgctcgcgggaccggcgccggcactcgccc
aagtcccgctcccaggagcggcgcgagcacgagcgggagagggagcgccgctccaagggc
ctgccccagatcaagtcagagactgtcagtgtttgcagtaccacgctctgggtaggacag
ctcgacaaaaggacaactcagcaggatgtgggaagtctcttggaggagtttggccccatt
gagtcgatcaatatgataccgcccagaggatgtgcctacattgtcatggtgcacagacaa
gatgccaacagagccctccagaaactgagccgaggcaacttcaaagtcaaccagaaatcc
atcaagattgcctgggctctgaataaaggaataaagccagactacaagcagtattgggat
gtagaattgggtgtgacatacataccatgggacaaagtcaaacctgaagatcttgaaagt
ttctgtgaaggaggaatgctggacaacgagacccttagtccagagtggaagggaattccc
aagaagtctgaaaatgaagtggctcagaatggaggcgcagaagctgcacacaatgaacca
gtgtcacctattcccaaagctttacctgtcccaattcctgttcccatgcctgcaccaata
acagtacctcctccacaggttcccccccatccatcagggcctcccatggttggtgcactc
cagccccctgctttcacagcacctttaggaatcccccctcctggatttgcccccggggtg
ccaccgccgccgccgcctccattcctccggcccggcttcaacccgctgcatttacctcca
gggttccttcctcccgggccaccgcctcccataactcctccggtctctgtcccgcacact
ccggcagtgaacatcccaaactctacagcaactggtgggaatgaggatgctacaaaggag
tcgtcagtaggaaatcccatcccaacagtagtttctggaggcagagggaacgctgaaagt
actgacacttccaaaatctatggcactattccacctcctgtagcacctaccagtgtccct
gctcccgtcacccaggctgttccactccttggcacccagggcgtggccccgccgccgccc
gcgcccgtggtggggctgcagactccgtccacggggctgctgggcgcccggcccggactg
atcccgctgcagcgcccgccgggcatgccgccgccgccgccgctgcncccgctgcagcgc
ccgccgggcatgccgccgccgccgccgctgccgcgcttccccatgatgcccccgcgccac
atgcccccgcacatgatgcacagagggcccccgccgggccccggcggcttcgggatgcct
cccccgcacgggatgaaaacgcccttccctccgcccggccacttcgtgcggcccgggggc
ggcccgggcggcggcgggcccggcggcgggcccgaggagagcagggacgggcggcagttc
cggaacgacaggcagttcacgcccagcagagaccaggagcgcttcgggaggagatccttc
gggaaccgggtggagaacgaccgggagcgctacggcggccgcgacgaccgggagcacgag
cggccgggcggccgcgacaggcgagactggggacggcgcagccccgagcgcgacaggcac
agggactcggaggacaggaacaggcgctccagcggccaccgagacagggagagggattcc
agggatcgggagtctcgcagagacaaggaagaaacccgcggcaaggagaagccggaggtg
acagacagggcggaaggcgacaaaaaccacgagccccacggcagcaaaacggagggcgcg
gaacttgtttcagaactcgctgcgggagacgctgagcccgcgggcgcgaaacccgcgccg
gagtcggcgtccgaggctacctcatccctggaccaggcggacaaggacacgggctccgcg
gccgaggcgccgcgctag
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