Paraburkholderia megapolitana: FNZ07_06525
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Entry
FNZ07_06525 CDS
T06515
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pmeg
Paraburkholderia megapolitana
Pathway
pmeg02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pmeg00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
FNZ07_06525 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmeg03021
]
FNZ07_06525 (rpoD)
Transcription machinery [BR:
pmeg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
FNZ07_06525 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
GerE
KIND
Motif
Other DBs
NCBI-ProteinID:
QDQ80857
LinkDB
All DBs
Position
1:1548298..1550706
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AA seq
802 aa
AA seq
DB search
MAKTTGGKTATGTGKGSEEPTRKVTSARPATPAKKASATSVTPAAGKKPSTTSAARAAPE
SVVKPVAKASAKAAQPATKRPSSRSAREAAAAQDDAAARETPVSTVQPAVVQQPRVETIA
STANSMTKKLNEVSVDDAPQTEEPAAVPGKVEKAKARDRRAKEKALLKDAFASTQPGTAE
ELEERRAKLRALIKLGKERGFLTYAEINDHLPDNFAETEAIEGIISTFNDMGVAVYEQAP
DAETLLLNDNAPAASSDDEVEEEAEVALSTVDSEFGRTTDPVRMYMREMGTVELLTREGE
IEIAKRIEDGLKHMVMAISACPTTIAEILANAERVANEEIRIDELVDGLIDDNAADADGF
SAQEAEEIENEVEEEEASEEEEEDDDGTAQATANAAQLEALKRASLEKFASISEWFDKMR
RAFEKEGYKSKAYLKAQETIQNELMTIRFTARTVERLCDTLRAQVDEVRQVERQILHTVV
DKCGMPRAEFIARFPGSETDLEWSEKIVAEGHAYSAILTRNIPAIREQQQRLLDLQARVV
LPLKDLKETNRQMAAGELKARQAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGL
MKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQ
ETGLEPDPATLAEKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDTNTVAPA
DAALHASMRDVVKDVLDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEA
KALRKLRHPSRSDKLKSFLEGN
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagactacaggcggaaagacagcgacaggtacaggcaaaggctctgaggagccg
accagaaaggtcacatcggccagacccgctactcccgcgaaaaaagcgtcggccacaagc
gttacgcctgctgcggggaagaaaccctcgaccacttctgccgcgcgagcggcaccggaa
agcgttgtgaaaccggtggccaaagcgtcggcgaaagccgcgcaaccggctacgaagcgg
ccgagttccagaagcgcaagggaagcggctgccgcgcaggacgatgcggcagcgcgcgag
actccagtatccacggttcaaccggctgttgtccagcagccgcgagtcgagactatagcc
agtacggcgaactccatgacgaaaaagctgaacgaagtatccgtcgatgacgcaccccaa
accgaggaacccgccgcggttccaggcaaggtcgaaaaggccaaggcacgcgaccgccgc
gcgaaggaaaaagcgctgctgaaggatgcgttcgcgtccacccaacccggcaccgccgaa
gaactcgaagagcgtcgcgcgaaactgcgcgcgctgatcaagctcggcaaggaacgcggc
ttcctgacgtacgccgaaatcaacgaccacctcccggataattttgccgagaccgaggcg
atcgaaggcatcatcagtacgtttaacgacatgggcgtggccgtttatgaacaggcgccc
gatgccgaaacgctgctgctgaacgacaacgcgccggccgcatcgtccgacgacgaagtc
gaggaagaagcagaagttgcgctctccaccgtcgactccgaattcggccgcacgaccgac
ccggtccgcatgtacatgcgcgaaatgggcacggtcgagctgctgacgcgcgaaggcgaa
atcgagatcgcgaagcgtatcgaagatggcctgaagcacatggtcatggcgatctccgca
tgcccgacgacaatcgcggaaatcctcgcgaatgccgagcgcgtcgcgaacgaagagatt
cgcatcgacgaactcgtcgacggcctgatcgatgacaacgctgcagacgcggatggtttc
tccgcgcaggaagcggaagaaatcgagaacgaggttgaagaagaggaagccagcgaagag
gaagaggaagacgacgacggcactgcgcaggctacggccaacgcggcccagctcgaagcg
ttgaagcgtgcctcgctcgaaaaattcgcgtcgatcagcgaatggttcgacaagatgcgt
cgcgcgttcgagaaggaaggctacaagtcgaaggcgtatctgaaggcgcaggaaacgatc
cagaacgaactgatgaccatccgcttcaccgcgcgtaccgtcgagcgtctgtgcgacacg
ttgcgtgcgcaggtggacgaagtgcgtcaggtcgaacgtcagatcctgcatacggtcgtc
gacaagtgcggcatgccgcgtgccgagttcatcgcgcgtttccccggtagcgaaacggat
ctcgaatggtccgaaaagatcgttgccgaaggacatgcgtatagcgcgatcctcacgcgg
aatattcccgcgatccgcgaacagcagcaacgtttgctggatctgcaggcgcgtgtcgtg
ctgccgctgaaggacctgaaggaaaccaaccgtcagatggcggctggcgaactgaaggcc
cgtcaggcgaagcgcgagatgaccgaggccaacctgcgtctcgtgatctcgattgcaaag
aagtatacgaaccgcggcttgcagttcctcgacctgatccaggaaggcaatatcggcctg
atgaaggcggtggacaagttcgaatatcgccgcggctacaagttctcgacgtacgcgacg
tggtggatccgtcaggccattacgcgttcgattgcggaccaggcgcgcacgatccggatt
ccggttcacatgatcgaaacgatcaacaagatgaaccgtatttcgcggcagatcctgcag
gaaaccggtcttgagccggatccggcaacgctggctgaaaagatggagatgccggaagac
aagatccgcaagatcatgaagatcgcgaaggaaccgatctcgatggaaacgccgatcggt
gacgacgacgattcgcatctgggcgatttcatcgaggatacgaacacggtcgcaccggcc
gatgccgcgttgcatgccagcatgcgcgatgtcgtgaaggatgtgctcgattcgttgacg
ccgcgtgaagcgaaggtgctgcggatgcgcttcggtatcgaaatgagcaccgaccatacg
cttgaagaagtcggcaagcagttcgacgtgacacgtgagcggattcgccagatcgaggcg
aaggcactgcgcaagctgcgtcacccgagccgttcggacaagctgaagtcgttcctcgaa
ggcaattga
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