Poecilia mexicana (shortfin molly): 106915209
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Entry
106915209 CDS
T08022
Symbol
tnrc6a
Name
(RefSeq) trinucleotide repeat-containing gene 6A protein
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
pmei
Poecilia mexicana (shortfin molly)
Brite
KEGG Orthology (KO) [BR:
pmei00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmei03019
]
106915209 (tnrc6a)
03036 Chromosome and associated proteins [BR:
pmei03036
]
106915209 (tnrc6a)
Messenger RNA biogenesis [BR:
pmei03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106915209 (tnrc6a)
Chromosome and associated proteins [BR:
pmei03036
]
Eukaryotic type
Gene silencing
piRNA pathway
106915209 (tnrc6a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
106915209
NCBI-ProteinID:
XP_014838143
Ensembl:
ENSPMEG00000002692
LinkDB
All DBs
Position
Unknown
AA seq
1840 aa
AA seq
DB search
MAPIRDSVSHSPNQTGLEHPGLDSQYEPPPWSSGSPCSSNGNSNWSKVLGDGSSDKSNNT
CSPSSSVWPPSSSSFSCSSSSSGCGSGSDPELASECMDADSNSSVGSEKNLGLAATTVMM
MSANTSSSVSSTASSPSSLTSTMMVGVGVNGDSNICQVGGIGTLSNANNENNITGSSHYS
MAGSSSIGSNNMSNHNNKLFGSSGVWGSQSGSNMNTIGGSNSYINGGSNPNILNPNANHG
AWPQNPTPNPVCQGQRPPQAHGMTSKLGVVPHQGPLMAWGGMAAPDSSSMMEDTEVNNGT
SSSKVLGGSNSGNGGLLPSNLNTEPNGPNNTILMNTTTTTNATMTSSPPDSTASPLLSGE
RSWGSIGGGNGGPLANGSPSLAPQHPQGESGGTGAFGTPWGAATYPVDKGPLNVDTVNSQ
NSSTAAFKSNNNHNNTGAPRSDQGPTNTPNQPQSNLSWSVGPNQIPGSTGQAPGSGNQTT
VGPPAGIPRPWGSSASSSSSSSSSSSSSTSNSKMSNGEWGSATTGNSSDAGIQKGSSPNN
GWKSLEDDAMGMGGAGAGGGSQGLGGVTGGWGCSGGSEGSCESSGGRSSSDRDVNQSKGG
NRRKGNHTPSMTPAITRADVDPRVLSNTGWGQTPIRQNTAWDVNSPSVNQGPKGDERKQS
SGGSSWGTATSAAPSQTSGGWGVGPSSSGPDSGGSGWGEQKQTSGWDSKGRSGWDDGSSY
KGGNSSNTWNNNNVKEDRSMTWTNTPKMQQGWGSNSGNGSEGWGSGGDGTRTGASNHWGE
PQKGASSVGWDSDSDRSGCWSEPSRTTSSSSTWVGSGGSNTPDQSTPNPSSNWGDPVHKP
NPQSSSQGWGEPGKNNHGAQNWGDANTKPSNEWSKGPESSMSRGNQGSSKPTGWLGGPMP
AVGQKENIATGWEEPSPESIRRRMEIDDGTAAWGDPGKYSGGAVNMWSRTTQSDPEPMAP
PSQNKPHPAHSSMPPVQHVNQDKTSTSSWGEPYSQQKESSSWGEPSAGPPVTVDNGTSAW
GKPMDTSAGWDEPNKDVRESGSGWGNQHKSGPKPMETWGSEDVSMSNSWDQEEEVEIGMW
SNNQQDSRSHDQNTWNYKQKGPNKMNKPVNKQDDHWKPFITQFSSMSFSRDSPDESMKPG
SGMGTDKRMDMSSMGDYNGIMGKNPVSRHQYHKDSVVDRPYLDKLSAYDSPASDELSSNQ
SMSLSPSNSAQPIPCFNSGPSPSHSSSGAAPQNVNPMLGGSSVAQGRGGPQSQPPPQPNL
RNQVPPTILPSQVPPSLLKYPGANSGLNPLFGQQVAVLNQLSQLNQLNQLSQLQRLLFQH
QQQQKVQSQRAMPVGRQTEQTRPIGSSPSMMQPPRQLKPYPDNYLSQNTPDLQKDASSIG
SFGNFSFGLNSNQNVTLDMGVGGGSSSGGGAVNYKELPQSRLRKLWAADPLEQNSKPGAM
SSGLRLDDSPFCDFLSPGPSPLSPPGQSMGSVGDGWPPRANSPPPHGNTVTWPPEFRPGE
PWKGYPNIDPETDPYVTPGSVINNLSINTVRDTDLLRDRNNGPSSSLNTTMPSNSAWSSI
RASSHSGSLTSTAQSTSARPSESKWSPGGGSVSNSSLAHELWKVPLSPKPLPVAAPSRPP
PGLTSQKPSPASSSWDGSALRLGGWSSSESRYTPGSSWGDSSSSGRTQWLVLKNLTPQID
GSTLRTLCMQHGPLITFHLNLPHGNAVVCYSSKDEAAKAQKSLHMCVLGNTTILAEFASE
EEISRFFAQGQSLATPSSGWQAIGSSQSRMDQSHPFPSRASDPSQWNSGDLHRSSLWGGP
NYSSSLWGNPSAAEQGRISSSSPISSFLPVDHLTGGGDSM
NT seq
5523 nt
NT seq
+upstream
nt +downstream
nt
atggctcccattcgggattccgtcagccattcccctaatcaaacaggtttggagcatcct
ggcttggactcccagtatgaacctcccccctggtcctctggctccccgtgcagcagtaat
ggtaacagcaactggagcaaagtcctaggtgacgggagttccgacaaatccaacaacact
tgttcacccagctcctctgtgtggcctccctcctcctcttcattttcttgctcctcatcc
tcctctggctgtggttcagggtccgatccggagttggcatcagaatgcatggatgcagat
tctaactcttcagtcggttcagagaagaacctcggccttgctgcgactacagtgatgatg
atgtcagccaacacttcttcctccgtgtcctccacagcttcttccccctcctccctgaca
tccaccatgatggttggtgtcggcgtgaacggagacagcaacatttgtcaggtcggaggc
atcggaaccttaagcaacgcaaataacgaaaacaatatcaccggatcctcacactactcc
atggctgggtccagcagtattggcagcaataatatgagtaaccacaacaacaagctattt
ggcagtagtggtgtatggggctcccagtcaggcagcaacatgaacaccatcggtggaagc
aactcttatataaatggagggtcaaacccaaacattttaaatccaaatgccaaccacggt
gcctggccacagaatccaaccccaaacccggtgtgccagggccaaaggcctccacaggct
cacgggatgacttccaaactgggtgtggttcctcaccaggggcccttaatggcctggggg
ggcatggcagctccagacagcagcagtatgatggaagacactgaggtgaataatggtaca
tcgagcagcaaggtgttaggaggcagcaacagtggcaatggcggtctgctgcctagcaac
cttaacactgaacccaatggaccaaataacactatcctgatgaatactactactactact
aacgccacaatgacctctagtccaccagactctaccgcctcacccctgctcagcggggag
cgttcctggggctccattggaggaggaaatggggggccgctggccaatggaagcccctca
ttagctccccagcaccctcaaggagaatcaggaggtactggggcttttggtacgccttgg
ggcgcagctacctaccctgtagacaaaggcccccttaatgtagacactgtgaactcccag
aactcctctactgctgcttttaagagtaataataaccacaataacactggggccccacgg
tcggaccaagggcccaccaacaccccgaaccagcctcaaagtaacttgtcctggagcgtt
ggccctaatcaaatcccaggctctacaggccaagcgcctggaagtggaaaccaaactact
gtgggccctccagcagggatccctcgcccatgggggagcagcgcatcctcctcttcctcg
tcgtcgtcgtcatcgtcttcttccacctcgaacagcaaaatgtcaaacggagaatgggga
tcggcgacgactggcaacagttcagacgcaggaattcagaaaggaagttctcccaacaat
gggtggaagagcctcgaggatgacgctatgggtatgggaggagcaggagcaggcggcggg
agtcagggcctgggaggagtcactggaggctggggctgctccggaggaagcgaaggaagt
tgtgaaagctccggaggtcgatccagctcagacagagacgtcaaccagtctaaaggagga
aaccgcaggaaaggcaaccataccccgtcgatgacgccagccataacccgggccgatgtg
gacccgagggttctttccaacactggatggggacaaacgcccatacggcagaacaccgct
tgggacgtcaactctccctcggtcaatcagggtcctaaaggggatgaaagaaagcagagc
agcgggggttccagctggggcacagcaacgtcggcagctccctcccagacctctggaggt
tggggggttgggccaagcagctcaggccctgatagtggaggctctggctggggagagcag
aaacaaacatcaggttgggacagtaaaggaagaagtggctgggatgatggatccagttac
aagggcggtaacagcagcaacacctggaacaacaacaacgttaaagaggacaggtcaatg
acatggactaatacacccaaaatgcagcagggttgggggtccaacagtggaaacggtagc
gagggatggggcagcggtggcgacggcaccagaacaggagccagcaaccactggggggaa
cctcagaagggcgccagctcagtgggctgggacagcgacagcgaccgctccggatgttgg
agcgagccgagccggaccaccagcagcagcagcacctgggtaggcagcggaggatcaaat
actcctgaccagagcactccaaaccccagttccaactggggagacccggtccacaagccc
aaccctcaaagtagcagccaaggctggggtgagccagggaagaacaaccatggagctcag
aactggggggacgccaacactaaaccttctaacgaatggagtaaaggtcctgaatccagc
atgtccaggggcaaccagggttccagcaaacccacaggctggcttggtggcccaatgcct
gctgtaggccagaaggagaacattgcaactgggtgggaggaaccttctccagagtccatc
cgtcggaggatggagattgatgacggaactgcagcgtggggagatcctggtaaatacagc
ggaggcgctgtcaacatgtggagcaggaccactcagtcggatccggagcccatggccccg
ccctctcagaataaaccccacccagcacacagctcaatgccgcctgtgcagcacgtcaac
caggacaaaacctccacttcaagctggggagagccctactctcagcagaaggagtcttcc
tcatggggggaaccttcagctggtccacctgtgacggtggacaacgggacatctgcctgg
gggaagcccatggacaccagcgctggctgggacgaacccaacaaggacgtcagagaatct
gggtcaggatggggcaaccagcacaagtctggtcccaagcctatggagacgtggggtagt
gaggacgtgtccatgagcaacagctgggaccaggaggaggaggtggagattgggatgtgg
agcaacaaccaacaggacagccggtctcatgaccagaacacgtggaactacaagcaaaaa
ggccccaacaagatgaacaaaccagtcaacaagcaggacgaccattggaaaccatttatc
acccagttcagcagcatgtctttctctagggactctcctgacgagtccatgaagccagga
tcaggcatggggacggacaaacgtatggacatgagcagcatgggggactacaacggcatc
atggggaagaacccagtttctcgacaccagtatcacaaggactctgtcgtagatcgtcct
taccttgacaagctttccgcttatgatagccctgcttctgatgagctctcctccaatcaa
agcatgagcctttcccctagcaattctgctcagcctatcccctgtttcaactctgggcca
tccccttcccactctagttctggggccgctccgcagaatgtaaatcccatgttgggtggc
agcagcgtagcacagggccgaggaggcccccagtcccagcccccacctcaacccaatctt
cgcaaccaagtgcctccgaccatcctgccctctcaggtccctccctctctgctgaagtac
ccaggagctaacagtggattgaaccctctgtttggtcagcaggtggctgtgctcaaccaa
ctctcccagctcaaccagctcaaccagctcagccagttacagcgtcttctctttcagcat
cagcagcagcaaaaggttcaaagccagagggccatgcccgtgggtcgtcagactgaacag
acgcgtcccattggttcgtctccatcaatgatgcagcctcctcggcaactcaaaccgtat
cccgacaactacttgtcccaaaacaccccagacctgcagaaggacgcttcctccatcggc
tcctttggcaacttctcctttggcttgaactctaaccagaatgtaaccctggacatgggt
gttgggggtggaagcagcagtggcggaggagctgtgaactacaaagagctgccgcagtcc
agactgaggaaactttgggctgctgaccccctggagcagaacagtaaacctggtgctatg
tcgtctggactccgtctggacgactctcctttctgtgatttcctgtctcccggcccgtct
cccctgagccctcctggtcaatcaatgggctctgtgggggatggctggccaccccgtgcc
aactcccctcctccccatggaaatactgtcacctggcccccagagttccggcccggggag
ccttggaaaggttaccccaacatcgaccccgagactgacccttacgtgacccctggtagt
gtcatcaacaacctttccatcaacaccgtccgcgacacagacctcctcagggacaggaac
aacgggccatcctcatcactgaacaccacgatgccttctaacagtgcctggtcatccatt
cgtgcctccagccacagcggttccctcaccagtacagcacaaagcacttcagctagaccc
agtgagtcaaagtggtctcctggcggcggttctgtgtccaactcctctttagcccatgag
ctttggaaggtccccctgtctcctaagccgctgccagtagcagccccctccagaccaccg
cccggcctcaccagccagaagcccagccccgcctcctccagctgggacggctctgccctg
aggctggggggctggagctcctccgagtccagatacacgcccggctccagttggggtgac
agcagcagctcagggagaacccaatggctcgttctgaaaaatctcacacctcagattgac
ggctctacactgaggactctgtgcatgcagcatggccctctgatcacattccacctcaac
ctgccacatggtaacgccgtggtttgctacagctcaaaggatgaagccgccaaggcccag
aagagcctgcacatgtgtgttttggggaacactactatactggctgagttcgccagcgag
gaggaaatcagccgcttctttgcacaagggcagtcactggccacgccctcctctggctgg
caggccatcggctcctctcaaagccgaatggatcagtctcaccccttccccagccgcgcc
tctgaccccagccagtggaacagcggcgacctgcacagatcctctctgtggggcgggccc
aactactccagtagcctgtgggggaaccccagcgccgctgagcaggggcggatcagcagc
tcctctccaatcagctccttcctcccggtggaccacctgacggggggcggggactccatg
tga
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