Penaeus monodon (black tiger shrimp): 119574267
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Entry
119574267 CDS
T08784
Name
(RefSeq) collagen alpha-1(XXVII) chain-like isoform X1
Organism
pmoo
Penaeus monodon (black tiger shrimp)
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
119574267
NCBI-ProteinID:
XP_037777355
EnsemblRapid:
LOC119574267
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Position
6:15278131..15338511
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AA seq
1001 aa
AA seq
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MSQRMQESPFRETEWDQRLDRMLDDLKTTVGSDGEMSGTEGRSDSTLVSSFSQHRAPSPD
ERLDATFLDIFRSSSRSEPRSSSRGGSRTGSALGMVEDGGHMKHSRREYLSPDEKTHVVT
EKYEYDTGDTSKTSHYQKKVMKSTYSNYNSMSAGSLDDPPTHALESPPQTSRPAGTKVIS
ASQKVANKLVDALASIGGEEGYVPAPDSSDTDTLKTDTLKTTKTVSSDYSTLGRLRKNIR
ELDTLIDSLEDSEQGGEPTTNASAEAQSETVVVVAKQESKVSTQITAPAPEVAAEPALAL
TLATAQAQSQASPSSRAPQESHIQTVVETRSSTTSQQQVAKESTTPSSGLTNGTAPASQP
TRYDGDDEMIDDKSGEVRRIVWRNRFEKTYETQDSRPTATVSIEDEARRRQLIQRQQQHT
STSASTSTLSSPPGPSSPPQRGPSSPRLPQLQCAVYWPGLGVGPNVSPGSQSWKDPIPMP
TPPQLSPREPGVAYIYTYGNTGGSGVQHMPPLNYVTVPGPSSVPPSEGAPSPTPSQLQGP
QPIIYHYSYHYTIQPGQPLPDGAPPPPGGLPSGSPPALQMAPSSQPPSSSTETIRTVHQT
ISGQPGQPGQPGQPGQPGQPGQPGHLVQPGQPGQPAQPGQPGYPGQPSSSVTNYNIQSYS
SSSRSKTSSVTHTDTSTVYPGGPGGPGGPHGPGGPHGPGGPYGPGGPHGPGAPGGPDGPR
GPTGPGYDGPAHPSKPYGPGEPDGPGRTTEPGQPGNISITINKTTTTRTTHAFPGGPDHP
GGAGDVPPVTSTPYPSRGRSVSPEPHGPRSNSPHHVTYVTHVTRNTHSDSLDRVRRPKNE
TLPFPNTSPIRPAGDNKIPRRVDDLMTSFSDSEDGPGHPRHSPHRGDPADQQPLLPQNSQ
IVVKADADAKAVAEANADPKKEPTKNKAGPPVYYPPGHELFHETMHTMTLREGGGRRGKA
KWRMERSAGYKESSSHSESKGGMTMVPVCLPLCCGAACVVM
NT seq
3006 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcaacgcatgcaggagagtcccttccgcgaaacggaatgggatcagcgtcttgac
cggatgctcgatgacctaaagacgaccgtaggaagcgacggcgagatgtcggggacggaa
gggcgctcagactccaccctcgtctcctccttcagccaacacagagccccttcgcccgac
gagaggctcgacgcgaccttcctcgacatcttcaggagcagctcccgcagcgagccccgc
agcagttcgcgaggggggtcccgcaccggcagcgccctcggcatggtggaggacggtggc
cacatgaagcactcacgcagagagtacctgtcgcctgacgagaagacccacgtcgtcacc
gagaagtacgaatacgacacaggtgatacaagtaagactagtcactatcagaagaaagtg
atgaagtcgacctactcgaactacaactcgatgagcgcaggcagcctggacgacccaccg
acccacgcccttgagtccccgccacagacctcgcgtcctgccggcactaaagttatcagt
gcttcccagaaagtagcaaacaaattggttgatgcgctggccagtataggtggggaggaa
ggctatgtcccggctccggactccagtgacaccgacacactcaaaactgataccctgaaa
actacaaagaccgttagctcagattactcaacattggggcgacttcgcaaaaacatcagg
gaattagacacacttattgactccctcgaagactcagagcaaggcggagagcccacaaca
aatgccagcgccgaagctcagtccgagacggttgtcgttgtagccaagcaggagtccaaa
gtctcgacacagatcacagccccggcgcccgaggtcgcggccgaacccgccctggctctc
acgctggcgacggcgcaggctcagtcccaagcgagtccgtcctcgcgggcccctcaagag
tcacacatacagacagtcgttgagactcgcagcagcacaacctcccagcagcaggtggcg
aaggagagtacaacgccgtcctctggcttgaccaacggcaccgcgcccgccagccaacct
acaagatacgacggtgacgatgagatgatcgacgacaagagcggagaagtgcgacgcatc
gtctggcgcaacaggttcgagaagacctacgagacacaggactctaggccgacggccacg
gtaagcatcgaggacgaggcccgccgccgtcagctgattcagcgtcagcagcagcacact
tcgacgtcagcctccacctccacgctctcctctccccccggacccagctctcctccgcaa
cgcgggccgtcctcgccccgactgccgcagttgcagtgtgccgtgtactggccaggcttg
ggcgtcggccccaacgtatctcccggaagccagtcgtggaaggacccgatcccaatgccg
acgccgccgcagctctccccgcgagagccaggcgtcgcctacatctacacctacgggaac
accggagggtcaggcgtgcagcacatgccgccgctgaattacgtcacggttcccggtccc
tcgtcggtgcctccgagtgaaggcgcgccgtcgcccactccgtcgcagctgcagggcccg
cagcccatcatctaccactactcttatcactacacaatccagcccggccagccacttccc
gacggggctcctccccctccaggaggacttccttcagggtccccaccagctctccagatg
gctccctcctcccagccgccgtcctcgtccaccgagaccattcgcacagttcatcaaacc
atttcaggtcagcccggccagcccggccagcccggccagcctggccagcctggccagcct
ggtcagccgggtcatctcgtccagccaggccaacccggtcaaccagctcaacctggtcag
ccaggttatcctggacagccgtcctcatctgttaccaactacaatatccaatcctactct
tccagcagccgctcaaagacatcctcggtcacgcacacagacacatccacagtataccct
ggtggacctggggggcccggtggtcctcatggcccagggggtcctcatggtccaggcggc
ccttatggcccaggtggccctcatggccctggagcgcctggtggtcctgacggcccaagg
ggtcctactggccctgggtatgatggacctgcgcatccttccaaaccttatggtcccggt
gaacccgatggccccggcagaaccaccgagcctggccagcccggaaatatctccatcacc
atcaataaaacgacaacaacgcgcaccacgcacgccttcccgggcggtcctgaccacccc
ggaggcgctggcgacgtcccccctgttacctcaaccccttacccgagccgcggcaggtcg
gtgtcccccgagccacatggcccgaggagcaactcgccgcaccacgtgacgtacgtgacg
catgtcacaagaaacacacactccgactccctggaccgcgtcagaaggccaaagaacgag
actcttccattccccaacacctcgcccatacgacctgctggagacaacaagatccctcgc
cgagtggatgatctcatgacctcattctccgattccgaggatggtccaggccacccgagg
cactctccacaccgcggagacccagctgaccagcaacctctgctgccacaaaacagtcag
attgtggtgaaggctgatgcagacgccaaggccgtcgccgaagcaaacgcagatccgaag
aaagaaccaacgaaaaacaaagctggacctcccgtctattatcctccgggccatgagctc
ttccacgaaactatgcacactatgacgctgagggagggcggtggtcgccgagggaaggcg
aagtggagaatggagcgatctgcaggatacaaggagagttcttcccattctgaatccaaa
ggaggcatgacaatggtgcccgtctgtttgccactatgctgtggggccgcttgcgttgta
atgtaa
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