Paenibacillus mucilaginosus 3016: PM3016_4943
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Entry
PM3016_4943 CDS
T01757
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pmq
Paenibacillus mucilaginosus 3016
Pathway
pmq03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pmq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PM3016_4943
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmq03400
]
PM3016_4943
Enzymes [BR:
pmq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PM3016_4943
DNA repair and recombination proteins [BR:
pmq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PM3016_4943
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
LigD_Prim-Pol
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
AFC31675
UniProt:
H6NLW0
LinkDB
All DBs
Position
complement(5942721..5944148)
Genome browser
AA seq
475 aa
AA seq
DB search
MPVFKPMAPILTDRLPQGDEWGYQLKWDGFRILALVDEGRVELVSKYGLPKTKTYPDLVR
VLSRLPGRFLLDGEAVLLDPATGRPSFQRMQQRDKLADPALIRRAAERSPVQYVAFDLLQ
LGGRDLRGRPFRERHEALDQLAADWEPPLCTAQLFPDGDALWDWVCEREWEGVIAKRLDS
PYAEGKDHRDWFKRKTALRLEAEAVGIVYREGRVASLVLQQGGKYLGRASSGLDAAAKRE
LGRLPTVPAAGPRSGELPEGLRGAEIRWLAEPPARHRERPGADRSGTAAAPETAGDRRES
DMTDERGIVQVDGVEVEISRPDKLLWPEPGITKLIYLQKLAALSPYLLPYCRDRHLTTRR
FPHGVQGKFFYQKNAPGGRPDYVRTHLYEGVEYVNLDSLPVLLWLGNLAALEFHPSFETV
HGEEPQEWVIDVDPSGRATPVSWRRPPGSERRWKGWACVRSPRPPELRAFKSWSR
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atgcccgtcttcaagccgatggccccgatcctgacggaccggcttccgcagggggacgag
tggggctaccagctcaagtgggacggattccggatcctggcccttgtcgatgaggggagg
gtggagctcgtctccaagtacggcctgcccaaaacaaaaacgtaccccgatcttgtccgc
gtgctgtcgcgtctgccgggtcgcttcctgctcgacggcgaagcggtcctgctcgacccg
gccaccggcaggccgagcttccagcgcatgcagcagcgcgacaagctggccgacccggcg
ctcatccggcgggctgcggagcggtccccggtgcagtacgtcgccttcgacctgctgcag
ctcggcggcagggacctccgcggacggccgttccgggagcgccatgaagcgctggatcag
ctcgcggccgactgggagcccccgctctgcaccgcccagctgttcccggacggggatgcg
ctctgggactgggtctgcgagcgggaatgggagggggtcatcgcgaagcggctggacagc
ccgtatgccgagggcaaggatcaccgggactggttcaagcgcaagaccgccctccggctc
gaagcggaagcggtcggcatcgtgtaccgcgaaggccgggtggcctcgctcgtcctccag
cagggcgggaagtatctcggccgggcctcgtccgggctggatgccgccgcgaagcgggag
ctcggccgtctgccgacggtgcccgcggccgggcctcggtccggggagctgcccgagggc
ctgcgcggagcggagatccgctggctggcggagccccctgcccgtcaccgtgagcggccg
ggagctgaccgaagcgggactgctgcggcacccgaaactgctggcgatcggagggaaagc
gatatgacggacgaacgcggcatcgttcaagtggacggtgtggaagtggagatctcccgc
ccggacaagctgctgtggccggagcccggcatcacgaagctgatttacctgcagaagctg
gcggccctgtcgccttatctgctgccgtactgccgggaccggcatctgacaacacggcgg
ttcccgcatggggtgcagggcaagttcttctaccagaagaacgctcccggcggcaggccc
gattatgtgaggacccatctctatgaaggggtggagtatgtcaacctcgattcgctgccg
gtgctgctgtggctcggcaacctggcggcgctggagttccatccgtccttcgagacggtg
catggcgaggagccgcaggagtgggtcatcgacgtggatccgagcgggagggcgaccccc
gtctcatggaggcggccgcccgggtcggagaggcgctggaagggatgggcctgtgttcgt
tccccaagacctccggagcttcgggcgttcaagtcgtggtcccgctga
DBGET
integrated database retrieval system
