Paenibacillus mucilaginosus 3016: PM3016_5352
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Entry
PM3016_5352 CDS
T01757
Name
(GenBank) putative DNA ligase-like protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pmq
Paenibacillus mucilaginosus 3016
Pathway
pmq03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pmq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PM3016_5352
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmq03400
]
PM3016_5352
Enzymes [BR:
pmq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PM3016_5352
DNA repair and recombination proteins [BR:
pmq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PM3016_5352
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
AFC32055
UniProt:
H6NB87
LinkDB
All DBs
Position
complement(6384547..6385458)
Genome browser
AA seq
303 aa
AA seq
DB search
MLLTAIAPMTAEAAGEPFDDEAFLFEPKWDGGRLLLHKQGERCEIYTRSGRIVTEKLPEL
REALADLPVRSVLLDGEGIVLRGGRPVFDDWAYRLRISQAAKIRTARQTHPVVFAAFDVL
CTDRPHLEEPLTQRKARLGELLQRGGGILTPTVSVEAQGRRLYELTAAQELEGIVAKRKT
SLYIPGRRSSDWIKIKHPRLIDTVILGCRSEPFELVVGLQFRTVKNKPVGRVSKGLTVED
RDRFLQAARELRVRQEGGVQWIEPRLCCRISYRDRSEMHQLEDTEFLAFLWDKQPEECVW
PYT
NT seq
912 nt
NT seq
+upstream
nt +downstream
nt
atgctgttgacggcaatcgccccgatgacggctgaggcggcgggcgagcccttcgatgac
gaggcgttcctgttcgaacccaagtgggacggagggcgcctgctgctgcacaagcagggg
gaacgctgcgagatctatacgcgaagcgggcgcatcgtgaccgagaagctgccggagctg
cgggaggctctggcggacctcccggtccgctccgtcctcctcgacggcgagggcatcgtg
ctgcgcggcggccgtcccgtcttcgacgattgggcgtaccggctgcggatcagccaggcc
gccaagatccgtaccgcccgccagacgcatccggtcgtcttcgcggcctttgacgtgctc
tgcacggaccggccgcatctggaggagccgctgacgcagcgcaaggcccggctcggggag
ctgctgcagcgaggcggcgggatcctcacgcctaccgtgtcggtggaagcccagggccgc
cggctgtacgagctgacggccgcgcaggagctggaggggatcgtggcgaaacgcaagacc
tccctctacataccgggccgccgaagctccgattggatcaagatcaagcacccgcgcctg
atcgacacggtcatcctgggctgccgctccgagccgtttgagctggtggtcggcctgcag
ttccgcaccgtgaagaacaaaccggtgggccgggtctccaagggcctcacggtggaggac
cgggatcgctttcttcaggctgcccgggagctgcgtgtgcggcaggagggaggggtccag
tggattgagccccggttgtgctgccggatctcataccgggaccgaagcgagatgcaccag
ctcgaagatacggaattcttagccttcctgtgggataagcagccggaggaatgtgtatgg
ccctatacgtaa
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