Petromyzon marinus (sea lamprey): 116956344
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Entry
116956344 CDS
T09614
Symbol
SOX2
Name
(RefSeq) transcription factor SOX-2 isoform X1
KO
K16796
transcription factor SOX2 (SOX group B)
Organism
pmrn
Petromyzon marinus (sea lamprey)
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pmrn03000
]
116956344 (SOX2)
Transcription factors [BR:
pmrn03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
116956344 (SOX2)
BRITE hierarchy
Motif
Pfam:
HMG_box
SOXp
HMG_box_2
DUF4799
Motif
Other DBs
NCBI-GeneID:
116956344
NCBI-ProteinID:
XP_032833808
EnsemblRapid:
ENSPMAG00000046708
LinkDB
All DBs
Position
64:complement(2743061..2747575)
Genome browser
AA seq
453 aa
AA seq
DB search
MYSMLEAELKPVGGPQPKAVSGPGGAGGGGVLGAGGDGKVPDDRVKRPMNAFMVWSRGQR
RKMAQENPKMHNSEISKRLGAEWKLLTEAEKRPFIDEAKRLRALHMKEHPDYKYRPRRKT
KTLLKKDKFSLQGGLLASGGPPGSAAAAAAAGLGQRLDPYPQLNGCWPNGSAYAAAAAGL
QQEPLAHAYSQHAALSAAHGAAQLQGLHRYDMSGLQYLPGGQGYLNGAAAAGYSVSYAPQ
PSRALSPPPSHATSSFGHHHQQQQQHQQQQQQQQQQQRTLSPVGGIYVQPGRTLSPASGY
AQQVREMSSPGIGYQAQQQQQHSHQPQALPPLSSLTSVGKSEAATPSPPAVAAPGGGGGG
GGGGGSGGSGRAACPGDLREMISMYLPMGSSEAGVSEVAQSRLHHHLSQHYQNAGPNGTI
PLTHIDTTLFHRGLGSRSRGGARGREEEEEDYI
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgtacagcatgctggaggccgagctcaagcccgtcggggggccacaacccaaggcggtg
tcgggacctggcggtgctggcggcgggggggtcctcggcgctggcggcgacgggaaagtc
cccgacgaccgcgtcaagcggcccatgaacgccttcatggtgtggtcgcgcggccagcgg
aggaagatggcccaggagaaccccaagatgcacaactctgagatctccaagcggctcggc
gccgagtggaagctcctcaccgaggccgagaagaggcccttcatcgacgaggcgaagcgg
ctgcgcgcgctgcacatgaaggaacacccggactacaagtaccggccccgtcgcaagacc
aagaccctgctcaagaaggataagttctctctgcagggcggcctcttggcctccgggggg
cccccgggcagcgccgcggccgccgcggccgccggcctcggccagcgcctggacccctac
ccgcagctcaacggctgctggcccaacggcagcgcctacgcagcggccgccgcgggcctg
cagcaggagccgctggcccacgcctactcgcagcacgccgcgctcagcgcagcgcacggg
gctgcgcagttgcagggcctgcaccgatacgacatgagcggcctgcagtacctgcccggc
gggcagggctacctgaacggggccgcggcggccggctacagcgtctcgtacgcgccccaa
cccagcagagcgctctccccgcctccttctcacgccacttcgagcttcggtcaccatcat
cagcagcaacagcagcaccagcagcagcagcaacagcagcagcagcagcagcgcaccttg
tctcccgtcggcggaatttacgtgcagcccgggcgcacgctgtctccggcctccggctat
gcgcaacaggtgcgggagatgtcgtctcctgggatcggatatcaagcgcagcagcagcag
cagcactcgcatcaacctcaggcgctacctcccctctcttcgctcacgagcgtcgggaag
agcgaggcggccacgccatccccgccggccgtagccgcgcccggcggtggtggaggcggt
ggaggtggtggaggcagcggcgggagtggacgcgcggcgtgccctggggacctgcgcgag
atgatcagtatgtacctgcccatgggcagcagtgaggctggcgtgtccgaggtggcccag
agcaggctgcaccaccacctgagtcagcactaccagaacgccggccccaacggaaccata
cccctcacgcacatagacactactctctttcaccgtggccttggctcgcgatcacgcggc
ggagcgcgagggagggaggaggaggaggaggattacatttga
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