Podarcis muralis (common wall lizard): 114582265
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Entry
114582265 CDS
T06059
Symbol
COL6A1
Name
(RefSeq) collagen alpha-1(VI) chain
KO
K06238
collagen type VI alpha
Organism
pmua
Podarcis muralis (common wall lizard)
Pathway
pmua04510
Focal adhesion
pmua04512
ECM-receptor interaction
pmua04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pmua00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
114582265 (COL6A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
114582265 (COL6A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
114582265 (COL6A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pmua04147
]
114582265 (COL6A1)
00536 Glycosaminoglycan binding proteins [BR:
pmua00536
]
114582265 (COL6A1)
Exosome [BR:
pmua04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
114582265 (COL6A1)
Glycosaminoglycan binding proteins [BR:
pmua00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
114582265 (COL6A1)
Hyaluronan
Extracellular matrix or blood plasma proteins
114582265 (COL6A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
VWA_3
DUF1194
vWA-TerF-like
Motif
Other DBs
NCBI-GeneID:
114582265
NCBI-ProteinID:
XP_028559002
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All DBs
Position
1:135111137..135160388
Genome browser
AA seq
1015 aa
AA seq
DB search
MKFAYFFPAFLLQGCFLFRTVLAQATAVSNGAATFQDCPVDLFFVLDTSESVALREKPFG
ALVDQVKAFTNRFLDKLTDRYYRCDRNLVWNAGALHYSDEVQLIKELSRMPAGRADLKNR
VSSVVSIGKGTYTDCAIKRGIEELLIGGSHKNENKYLIVVTDGHPLEGYKEPCGGLEDAA
AEAKHLGIKVFSIAISPDHLESRLGVIATDHSYRENFTATGRPARDIDNTIDKITARITE
TVEQECCSYECQPARGPPGPLGDPGYEGERGKPGLPGEKGDAGEPGKQGDPGPIGYQGMK
GEKGTRGDKGSRGAKGAKGEKGRRGIDGLDGKKGEQGFHGLPGCKGSPGFDGLQGPPGPK
GDLGPYGPKGRKGEPGLSGRPGRTGNSGSPGDKGPPGESGVPGEKGEMGDEGNPGPDGPT
GDRGANGERGPLGNPGTRGPRGEKGEPGPQGDQGREGPFGPPGEPGEAGPAGPKGYRGDE
GPSGPEGPKGLPGPPGLPGETGLMGDRGEDGRAGNGTDGFPGFPGYPGNRGDPGANGTKG
YPGPKGDEGEIGDPGLESNATGTRGMKGAKGYRGPEGPPGPAGPRGPPGPDECEILDIIM
KMCSCCECKCLPGDVLFVLDSSESIGLQNFQIAKDFIVKVIDRLIKDEKVTFRPGETNVG
VVQYSHDNTQELVALGDSNIDNIGAFKEAVKNLHWIAGGTYTGEALQFTKDNLLRRFPSE
KRVVIVITDGRSDVLRDQTPLNVLCESKTQVVPLGIGDISNKPANTEQLSTISCGGISVY
QENFALLLDDNFLQNVTSQICKEKKCPDYTCPISFAGPADITLLVDSSTSVGSRNFNTTK
TFVKRLAERFLTAAKPSEDAVRISVVQYSGKGQQKAEARFEQNYTVVANAIDSMEFMNDA
TDVNAALRFVTSLYRQSARAGAKKRVLIFSDGNSQGITSSAIETAVQEARRAELEIYVLV
VGTQANEPNVRVLVTGKAAEYDVAYGERHLFRVPDYQSLLRGVFYQTVSRKIAVD
NT seq
3048 nt
NT seq
+upstream
nt +downstream
nt
atgaagttcgcttactttttcccagccttcctacttcagggctgctttcttttcagaaca
gttcttgctcaagcaaccgcagtctccaatggtgcagcaacatttcaagattgtcctgtg
gatctgtttttcgtcttggatacctctgagagtgttgccttaagagaaaagccttttggg
gccttggtggatcaagttaaagcattcaccaaccgattccttgataagttaactgacagg
tactatcggtgtgaccggaatcttgtgtggaatgcgggagccttgcattacagtgatgaa
gtgcagctgatcaaggagctcagccggatgcctgcagggagagcagacctgaagaacagg
gtctcctccgtggtttctattggcaaaggcacctacacagactgtgccatcaagagaggg
attgaagagctgctcatcggaggatctcataagaatgaaaataaatacctgattgtggtg
acagatggacaccccttggaaggatacaaagagccctgtggcggattggaagatgctgca
gctgaagcgaaacatctggggatcaaagtgttctccattgccatatctccagaccatctg
gaatctcggctcggtgtgattgccacagaccattcctatcgtgagaatttcacagcaact
ggacgtccagcacgtgatattgacaacacaattgacaaaatcactgctagaattacggag
acagtggagcaagagtgctgctcatatgaatgccagcctgcccgagggcccccgggacca
ttaggggatccaggatatgagggagaaagggggaaacctggccttcctggtgaaaaagga
gatgctggagaacctgggaagcaaggagacccaggacccattggttaccaaggcatgaag
ggagaaaaaggtacccgaggtgacaagggctcaagaggtgcaaaaggagccaagggggag
aaaggcaggcgtggcatcgatggtttagatggcaagaagggtgaacaaggatttcatggg
ttaccaggatgcaaaggatccccaggatttgatggcttgcaaggacctcctgggccaaaa
ggggatctaggtccttatggacccaaaggaagaaagggagagcctgggcttagtggaaga
ccaggcaggacaggaaactctggaagtcctggagataagggaccgcctggagagtccgga
gtgcctggagagaaaggagaaatgggagatgagggaaatcctggcccagatggccccacg
ggagacaggggtgcaaatggagaaagagggccgctagggaaccctggtacccgtggacca
agaggggaaaagggtgagccagggccacagggtgaccaaggacgagaaggaccttttgga
ccgcctggagagccaggtgaagcaggcccagctggtccgaaagggtacagaggagatgaa
ggcccttctggaccggagggtcctaaaggactgcctggcccacctggattacctggagaa
actggcttgatgggtgacaggggagaagatggccgagcaggaaatggcaccgatggtttc
cccggtttcccgggatatcctggcaacagaggtgatcctggggctaatggtaccaaaggc
tatcctggtcccaaaggcgatgaaggagagatcggagacccagggctggaaagcaatgca
actgggacccgaggcatgaaaggagccaaaggttacagaggaccagaagggcccccagga
cctgcaggacccagaggccctccaggaccagatgaatgtgaaattttggatatcatcatg
aaaatgtgctcttgctgcgaatgcaagtgtcttcctggcgatgttctgtttgtgctggac
agttcagagagcattggcctgcagaacttccagattgctaaggatttcattgtcaaggtc
attgacaggcttatcaaggatgaaaaagtgacgtttagaccaggggagaccaacgttggt
gtggttcagtacagccatgacaacacccaggaactggtggccttgggagatagcaacatt
gataacattggagcctttaaggaagctgtgaagaacctgcactggattgctggtggcaca
tatactggggaggcccttcagttcaccaaggataacttgctgcggcgctttccctctgag
aaaagagtggtcatagtcatcacagacggacggtccgatgtacttcgggaccaaacacca
ctcaacgtgctctgtgaaagcaagacccaggtggttcccctgggtatcggtgatatttcc
aacaaaccagcaaacactgagcaattatcaactatttcctgtgggggcatctctgtttat
caagaaaactttgctttgctgctggatgacaatttcctgcagaatgttacctcgcagatc
tgcaaagaaaagaaatgcccggactacacctgcccaatctcttttgctggcccagctgat
atcacactccttgtggatagctccaccagcgttgggagccgcaacttcaacaccaccaag
acgtttgtgaagcgccttgcagaacgattcctgacagcagccaagccttcggaggatgcc
gtgcgcatttctgtcgtccagtacagcggcaaaggccagcagaaagcagaggcgcggttt
gagcagaactacacggtggttgctaatgctattgacagcatggaattcatgaatgacgcc
acggatgtgaacgcagccctccgctttgtcactagtctctaccggcagtccgcccgtgct
ggagctaagaagagagttctgattttctccgatggcaactctcaaggcatcaccagcagt
gccattgagacggcagttcaagaggctcgacgggcagaacttgaaatctatgtactagtg
gttggcactcaagccaatgagcccaatgtgcgtgttctggtcactgggaaagcggcagag
tacgatgtggcctatggagagaggcacctttttagagtgccggattaccagtctctgctg
aggggagtgttctatcaaactgtctccaggaaaatagctgtagactga
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