Podarcis muralis (common wall lizard): 114586408
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Entry
114586408 CDS
T06059
Symbol
COL2A1
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
pmua
Podarcis muralis (common wall lizard)
Pathway
pmua04510
Focal adhesion
pmua04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
pmua00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
114586408 (COL2A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
114586408 (COL2A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pmua00536
]
114586408 (COL2A1)
Glycosaminoglycan binding proteins [BR:
pmua00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
114586408 (COL2A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
114586408
NCBI-ProteinID:
XP_028565653
LinkDB
All DBs
Position
2:11869112..11971409
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AA seq
1491 aa
AA seq
DB search
MFSFVDSRTLVLLAATQVILLAVVKCQDEDIQEAGSCVQNGQRYSDKDVWKPEPCRICVC
DTGTILCDDIICEEPRDCPNPEIGFGECCPTCPTDQPATSDRQPGPKGQKGEPGDIKDVV
GPRGPPGPQGPSGEQGPRGERGDKGEKGAPGPRGRDGEPGTPGNPGPAGPPGPPGPPGLG
GNFAAQMATGFDEKAGGAQMGVMQGPMGPMGPRGPPGPPGSPGPQGFQGSPGEPGEPGTG
GPMGPRGPPGPPGKPGDDGESGKPGKSGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLD
GSKGEAGAAGAKGEAGAAGEAGSPGPMGPRGLPGERGRPGPSGAAGARGNDGLPGPAGPP
GPVGPAGAPGFPGAPGAKGEAGPTGARGPEGAQGSRGESGTPGSPGPSGAPGNPGTDGIP
GAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQAGEPGIAGFKGEQGPKGEPGPS
GPQGAPGPAGEEGKRGGRGEPGAAGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPP
GLGGPKGATGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGAR
GQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAGGPPGPAGPVGERGEQ
GAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGTPGLVGPRGERGFPGERGSPGAQGLQ
GPRGLPGTPGTDGPKGATGPAGAVGAQGPPGLQGMPGERGAAGISGPKGDRGDIGEKGPE
GAPGKDGGRGLTGPIGPPGPAGANGEKGESGPPGPAGAAGARGGPGDRGEPGAPGPAGFA
GPPGADGQPGAKGEQGETGQKGDAGAPGPQGSSGAPGPQGPTGVTGPKGARGAQGPPGAT
GFPGAAGRVGPPGPNGNPGSAGPPGAPGKDGPKGARGDAGPTGRAGDPGLQGPAGPPGEK
GESGEDGPPGADGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGGPGDR
GPPGPVGPPGLTGPSGEPGREGNPGSDGPPGRDGSPGVKGDRGETGAVGGPGAPGPPGSP
GPVGPTGKQGDRGEAGAQGPMGPAGPAGARGMPGPQGPRGDKGEAGEAGERGLKGHRGFT
GLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGSNGMPGPIGPPGPRGRSGET
GQAGPPGNPGPPGPPGPPGPGIDMSAFAGLGQTEKGPDPMRYMRSDQASSNLRQHDAEVD
ATLKSLNNQIESIRSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAIKVFCN
METGESCVYPKPSSIPKKNWWTSKSKDKKHIWFGETINGGFHFSYGDENLAPNTANIQMT
FLRLLSTEGSQNITYHCKNSIAYMDEASGNLKKALLIQGSNDVEIRAEGNSRFTYSALQD
GCTKHTGKWGKTIIEYRSQKTSRLPIIDIAPMDIGGADQEFGVDIGPVCFL
NT seq
4476 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggattcaaggactctagtgctcctagcagccacgcaagtcatttta
ttagcagttgtcaaatgtcaggatgaggatatacaggaggcaggcagctgtgtacagaat
gggcagaggtatagtgataaagatgtgtggaaacctgagccctgccggatctgtgtctgt
gatactgggactatcctctgcgacgacataatctgcgaagaaccgagagactgtcccaac
cctgagataggcttcggagagtgttgccccacctgcccaactgaccagcctgccaccagt
gatcggcaacctggccccaagggacaaaaaggagaacctggcgatattaaagatgttgta
ggaccaagaggaccccctggaccacagggaccttcaggtgaacaaggaccaaggggagaa
cgcggagataaaggagagaagggtgctcctggaccacgtggcagagatggcgaacctggt
acacctggcaaccctgggcctgctggacctcctggacctccaggtccccctggccttggc
ggaaactttgctgctcagatggctacaggatttgatgagaaagcaggcggcgctcagatg
ggagtgatgcaaggaccaatgggacctatgggaccacgaggccctccgggacctccagga
tctcctggccctcaaggatttcaaggcagccctggtgaacctggtgaaccgggtactggc
ggtccaatgggtccccgtgggccacctgggccacccggaaaacctggcgacgatggtgaa
tctggcaaacctggcaaatcgggagagcgtgggccacctgggcctcagggtgctcgaggt
ttccctgggaccccaggtcttcccggcgtaaaaggtcacagaggttatcctggattagat
ggttccaaaggagaagctggtgctgcaggtgctaagggtgaagctggcgctgctggagaa
gctgggtcaccaggtccgatgggtccccgtggtcttccaggcgagagaggacgtcctggc
ccatctggtgctgcgggtgctcgtggtaacgatggcctccctggtccagctggtccaccc
ggacctgtcggccccgctggagctccaggtttcccaggtgcaccaggtgcaaagggtgaa
gctggccccactggcgctcgtggccctgagggcgcccaaggctctcgtggtgaatccgga
acccccggctctcctggaccatcaggagctcctggcaaccctggaactgatgggatccct
ggtgccaaaggatcagcgggtgctcctggcattgctggcgctccgggatttcctggccca
cgtggaccacctgggcctcaaggtgcaactgggcctttgggtcccaaaggccaggcggga
gaacctgggattgcaggcttcaaaggtgaacaaggtcccaagggtgaacctggaccttca
ggcccacaaggagctcctggaccggctggagaagaaggcaagagaggcggccgtggtgag
ccaggagctgcagggcccattggaccacctggagagaggggtgctcccggaaaccgtggc
ttcccaggtcaggatggattggccggtcccaagggtgctcccggtgaacgtggacctcct
ggccttgggggtcccaaaggagccactggagatcccggccgtcctggagagcctggcttg
cctggcgctaggggtctcactggtcgccctggtgatgctggtccccaaggcaaagttggc
ccatctggtgccccaggtgaagatgggcgacctggcccacctggtccacaaggtgcccgt
ggccagcctggcgtcatgggtttcccaggcccgaaaggtgcaaatggtgaacctggtaaa
gctggtgagaaaggacttcctggtgctcctggcctaagaggtcttcctggcaaagatggc
gagacgggagcaggtggaccgccagggcctgctgggccagtaggagagagaggcgaacag
ggcgcccccggaccttctggattccaaggacttccagggcccccaggtcctccgggtgaa
ggtggaaagccaggtgaccagggtgttcctggagaggctggcactcccggtcttgttggt
cccagaggcgagcgtggcttcccaggtgagcgtggatctccaggcgcccaaggcttgcag
ggtcctcgtggtcttcccggcactcctgggaccgatggaccgaagggcgcaactggtcct
gctggtgccgttggagcacaaggccccccaggtcttcagggaatgcctggtgagagagga
gctgcaggtatttctggaccaaagggagacaggggtgatattggtgagaagggaccagaa
ggtgctcctggcaaagatggcggcagaggcttgactggtcccattggtcctcctggccct
gctggcgccaatggagagaagggtgaatctggcccccctggcccagctggtgctgcaggt
gctcgtggtggccccggtgaccgtggtgaacctggtgctcccggccctgctggattcgct
ggtcctcctggtgctgatggacaacctggtgctaaaggcgagcaaggggaaactggccag
aagggagatgctggggccccagggccacaaggttcatctggtgctccgggcccacagggt
ccaactggtgtgactggtcctaagggagcgcgtggtgcacagggacctccaggtgctact
ggattccctggcgcagcaggaagagttggaccaccaggccctaacggcaatcccggttcc
gcaggacctcccggcgctcctggtaaagatggtcccaagggtgctcgtggtgacgcaggc
cccactgggcgtgctggcgatcctggtttgcaaggtcctgctggtcccccaggggagaag
ggagaatctggagaagatggtcctcctggtgctgacggcccacctggacctcaaggcttg
gcaggtcagagagggatcgttggtctccctggtcagcgcggtgagagaggcttccctggt
ctgccgggtccttctggtgagcctggtaaacaaggagctcccggcggccctggagacaga
ggtccacctggcccagttggtccaccaggcctgactggtccctctggtgaacctggacgt
gagggcaatcctggctcagatggtcccccgggcagagatggttcccctggcgtgaagggt
gatcgtggtgagactggtgctgtcggtggtcctggagctcccggcccacctggttctcct
ggtcctgttggtccaactggtaaacaaggagatagaggtgaagcgggtgctcaaggtcca
atgggtcctgctggccctgcaggggcacgcggcatgcccggtccacaaggtcctcgtggc
gacaagggtgaggctggcgaggcaggagagagaggtctgaagggtcacaggggattcact
ggcctgcagggtcttcctgggcctcccggtccttctggcgatcaaggtgcatcaggtccg
gctggtccttctggtcccaggggtcccccaggtccagttggcccctctggcaaagatggc
tctaacggaatgcctggccccattggccctcccggtcctcgtggtcgtagtggagaaact
ggccaagctggtcctcctggaaaccctggaccccctggtcctcctggcccacccggacct
ggcattgacatgtccgcctttgctggcctgggtcagacggagaaaggccccgaccccatg
cgctacatgcgatccgaccaggcttctagcaacctgaggcagcatgatgccgaggtcgat
gccaccctgaagtcgctcaacaaccagattgagagcatccggagccccgagggcagtagg
aagaacccagctcgtacctgccgtgacctaaaactctgccaccccgaatggaagagcggc
gactattggattgaccccaaccagggttgcactttggatgccataaaggttttctgcaat
atggagacgggagagagctgtgtttaccccaagcctagcagcattcccaagaagaactgg
tggacgagcaagagcaaagacaagaagcacatctggtttggagagacaatcaatgggggt
ttccacttcagctatggagatgagaacctggctcctaacacggccaacatccagatgacc
ttcctgcgcctcttgtctacggaaggctctcaaaatatcacctaccactgcaagaacagc
attgcctacatggacgaggcttctgggaaccttaagaaagctctcctgatacagggatcc
aacgacgtggagatcagagccgagggcaatagcaggttcacatatagcgccttgcaggat
ggctgcacgaaacacactggtaaatgggggaagacaatcattgaataccgttctcagaag
acctcacgcctgcccatcattgacattgcacctatggacattggcggagctgatcaagaa
tttggtgttgacattggcccggtgtgcttcttgtaa
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