Podarcis muralis (common wall lizard): 114588243
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Entry
114588243 CDS
T06059
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pmua
Podarcis muralis (common wall lizard)
Pathway
pmua03013
Nucleocytoplasmic transport
pmua03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pmua00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
114588243 (UPF1)
03015 mRNA surveillance pathway
114588243 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmua03019
]
114588243 (UPF1)
Enzymes [BR:
pmua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
114588243 (UPF1)
5.6.2.5 RNA 5'-3' helicase
114588243 (UPF1)
Messenger RNA biogenesis [BR:
pmua03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
114588243 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
114588243 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
114588243
NCBI-ProteinID:
XP_028569104
LinkDB
All DBs
Position
18:complement(6239045..6270326)
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AA seq
1132 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGGGGGSGGASA
QGNPGGVSAGGGGAGGPPSVALSPGQLDAQVNGPDGILQNGAVDDNVPKTSQLLAELNFE
EDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCK
EVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDS
SQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVD
EEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFT
LPKTDSDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDKDYGDEIAIELRSSVGAPVEV
THNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTA
QGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNI
AVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETG
ELSSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPE
CMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMH
PALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYL
NRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIAS
VDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLW
NHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGS
VYDRSSQGRPSNMYFQTHDQIGMISAGPSHVTAMNIPIPFNLVMPPMPPPGYFGQANGPA
AGRGNPKGKTSRGGRQKNRFGIPGAGQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPS
QMSQPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGVTGLSQY
NT seq
3399 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggcccagctcccagacgctgactttcctggacacggaggag
gccgagctgctgggcgccgacacgcagggctccgagttcgagttcaccgacttcacgctg
cccagccagacccagacgccgcccggaggaggaggaggaggaagcggcggggcctccgcg
cagggcaaccccggaggagtctcggcaggaggaggaggagccggcgggccgccctccgtc
gccctctcgccggggcagctggacgcccaggtgaatgggcctgacggcatcctgcaaaat
ggagcagtggatgataatgtgcctaagaccagccagctccttgctgaactcaattttgag
gaagacgaggaagacacttactacaccaaggaccttccagtgcatgcttgcagctactgt
ggcatccatgacccagcttgcgttgtctactgcaacaccagcaagaagtggttctgcaac
gggcgtgggaatacgtctggcagccatattgtgaaccaccttgtgagagccaaatgtaag
gaagtgacactgcacaaggatggccctctgggtgagacggtcctggagtgctacaactgt
ggctgccgcaacgtgttcctcctgggtttcatccctgctaaggcagactctgtggtcgtc
ttgctgtgcaggcagccttgtgccagtcagagcagcttgaaggacatcaactgggacagt
tctcagtggcagcctctgattcaagaccgctgcttcctttcctggctggtcaaaatccct
tccgagcaggagcagttgagggcgcgtcagatcactgcccagcaaatcaacaagctggaa
gagctctggaaggagaacccctctgccaccctcgaagacttggagaagcctggcgtcgac
gaagagccacagcacgtcctcctccgatacgaggatgcttatcagtaccaaaacatattt
gggcctctggtcaaacttgaggccgactacgacaagaaactgaaggagtcccagacacag
gacaacatcactgtgagatgggatctgggcttgaacaagaaaaggattgcctacttcacc
ttgccaaagacggattcagatatgcgcctgatgcagggggatgagatctgcctgaggtac
aaaggggatttggccccgctgtggaaaggaatcggccacgtgattaaagttcctgataaa
gattacggtgacgaaattgcgatcgagctgaggagcagtgtcggagcccccgtggaagtg
acccacaacttccaagtggactttgtgtggaagtcgacttcctttgacaggatgcagagt
gccctcaagacttttgctgtggatgaaacctccgtctctggctacatctatcacaagctc
ctgggtcacgaggtggaggatgtcattatcaaatgtcagctgccgaagcgcttcacagca
caaggacttcctgacctcaaccattctcaggtgtatgctgtgaagactgtcttgcagcgt
cccttgagtctcatccagggccctcccggaacaggcaagactgtcacctcggccaccatt
gtgtaccatctggctaggcaaggaaatgggcccgtgctggtttgtgccccgagcaacata
gccgtggaccagctgacggagaaaatccaccagacggggctgaaggtggtgcgcctgtgt
gcaaagagtcgtgaggccattgactcccctgtctcttttctcgctctgcacaaccagatc
aggaacatggatagcatgcctgaactccagaagctgcagcagctgaaagatgagactggg
gaactgtcctctgcagatgagaagcgctaccgggccctgaagcggacggcggagcgggag
ttgctcatgaatgcagacgtcatctgctgcacctgcgtgggagccggggacccaagactg
gcgaagatgcagttccgctccatcttgattgacgagagcacccaggccacggagccagag
tgcatggtgccagttgtcctcggggcaaagcaactgatcctggtgggcgaccactgccag
cttggccctgttgtgatgtgcaagaaggcggcgaaagcaggcctgtcccagtcactcttt
gagcggctggtggtgctgggcatcaggcccatccgcctgcaggtgcagtaccgtatgcac
ccagccctgagcgctttcccatccaacatcttttatgaggggtctctccagaatggtgtc
accgcagcggaccgtgtgaagaagggatttgacttccagtggccccagccagacaagccc
atgtttttctatgtgacccaagggcaagaagagattgcaagttctgggacttcttacctg
aacaggacggaggctgccaacgtggagaagatcaccaccaagctgctgaaggctggtgcg
aagccagatcagattggcatcatcaccccctacgagggccagcgctcctacctggtgcag
tatatgcagttcagcggctctctgcacaccaaactctaccaggaagtggaaatagccagc
gttgacgctttccaagggcgcgagaaggacttcattatcctgtcctgtgttagagccaac
gagcatcaaggcattggcttcctgaatgaccccaggcgcctcaatgtggctctcaccaga
gcaaggtatggtgtcatcattgttgggaacccaaaagcgctttccaagcagcccctctgg
aaccacttgctgaactactacaaggagcagaaagtgctggtcgaggggcccctgaacaac
ctccgtgagagcctcatgcagttcagcaagcctcggaagctggtcaataccatcaacccc
ggagcccggttcatgacaactgccatgtacgatgcccgtgaagctatcatccctggatcg
gtgtatgatcgcagcagccaaggccggccctccaacatgtacttccaaacccacgaccag
atcgggatgatcagtgccgggcccagccatgtcaccgccatgaacattcccatccccttc
aacctggtgatgcctcccatgcccccacctggctattttggacaggccaatgggcctgct
gccggacgtgggaacccaaaaggcaagaccagccgtggtgggcgccagaaaaaccgcttt
gggatcccaggggccggtcagtcaaacctccccaacagccaggccagccaggacgtggtc
tcccagccgttctctcagggccctttgactcagggctacatctccatgagccagccgtct
cagatgagccagccaggcttgtcccagccagagctgtcgcaggatagttaccttggtgac
gagttcaaatctcagatcgacgtggccctgtcgcaggactctacttaccagggggaacgc
gcatatcaacacggagtgacgggactgtcacaatattag
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