Podarcis muralis (common wall lizard): 114591309
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Entry
114591309 CDS
T06059
Name
(RefSeq) collagen alpha-1(XXIII) chain-like isoform X1
KO
K19720
collagen type III alpha
Organism
pmua
Podarcis muralis (common wall lizard)
Pathway
pmua04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pmua00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
114591309
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pmua00536
]
114591309
Glycosaminoglycan binding proteins [BR:
pmua00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
114591309
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
114591309
NCBI-ProteinID:
XP_028573971
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All DBs
Position
2:complement(59916999..60261742)
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AA seq
1009 aa
AA seq
DB search
MSEPREKKAPAASPPGGTGKGPAVVSLLFSLLSVGACFLLNAKTSRLEGRLVALEEELAA
GRAWSPGEQLGAEPLLALLQPQVDGLLQEKLSEGLAKLRTARDVSSECRCPPGPPGRRGK
AGRRGDPGPPGQSGRVGYPGPLGLDGKPGPPGAKGEKGDQGDVGPRGDQGNDGAAGPPGP
PGQPGARGPPGDTGKDGPRGPPGLPGEKGQPGEPGIMGEPGIPGGKGDAGIPGEPGIQGP
KGEQGSIGPIGEKGNEGLPGPKGKQGSIGPMGDKGIDGKPGPKGEPGSPGPKGDKGKDGL
PGPKGEPGSVGPMGEKGIDGLPGPKGKQGSVGPMGDKGIDGLPGPKGEPGSVGPMGDKGI
DGLPGPKGDAGSVGPMGDKGIDGLPGPKGEPGSPGPVGERGIDGLPGSKGEPGSPGPVGE
RGIDGLPGPMGEPGSPGPVGERGIDGLPGAKGEPGNIGPVGKRGMSGLPGPKGNRGSIGP
TGERGMDGLPGPKGNPGSIGQTGEKGIKGQPGARGKRGSAGSVGERGIDGLPGPKGEPGS
IGPMGEKGLDGLAGPKGEPGSPGPIGEKGIDGLPGPKGEPGGNGSVGDKCIDGLPGPKGE
PGSPGPTGDKGIDGLPGPKGEPGSVGPMGEKGTDGLPGPKGEPGSVGPIGVNGINGLPGP
KGEPGERGADGHIGPRGPPGLKGEQGDTVVIDYDGRILEALKAAGKLRLTGPPGPQGPPG
PQGAPGPKGELGLPGPPGVDGEKGPKGSKGDQGSSGLIGQKGEKGDVGMSGLPGPKGLKG
DQGNPGIAGERGETGEMGLSGPPGIDGPKGEPGAPCEKDLVQIIAEPGPPGVPGLPGPPG
PTGPQGIQGHKGPQGIQGHKGSDGAKGAKGESGHKGEKGVPGPHGPAGTPGLIGLPGTKG
EKGKPGEPGLDGFPGLRGEKGEKSERGEKGERGLPGRKGAKGQKGEPGPPGLDQPCPVFI
FKGEPGLPELDGVDMLCPLGPDGLPVPGCWHKPQIEMEEKMKKKKKLQP
NT seq
3030 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagccccgggagaagaaggcgcccgcggcttcgccccccggcggcactggcaag
ggccccgccgtcgtctcgctgctcttctcgctcctctcggtgggcgcctgcttcctgctc
aacgccaagacctctcggctcgagggccggctggtggccctcgaggaggagttggccgcc
ggccgcgcgtggagccccggcgagcagctcggcgccgagcccctgctcgccctgctgcag
cctcaggtggacgggctcctgcaggagaaactgagtgaaggattagccaaactgcgtaca
gcaagagacgtatcatctgaatgcaggtgcccaccaggtccacctggaaggcgaggaaag
gctggacgacgaggagatccaggtcctccagggcagtcaggacgagttggttacccgggg
cctcttggactggatggcaaaccagggcctccaggagcaaaaggggaaaagggggatcaa
ggagacgtcggcccaagaggggatcaaggtaatgatggcgctgctggtccgccaggtcct
cctggacagccgggtgcaagagggccccctggagacacgggaaaagatggcccaagggga
cccccaggccttcctggtgagaaaggacaacctggagaacctggtatcatgggtgagcct
ggtattccaggaggaaaaggtgatgctggaatcccaggagaaccagggattcaagggcca
aagggagaacaaggaagtattgggcccataggcgagaagggcaatgaaggactaccaggg
ccaaagggaaaacaaggaagcattggcccaatgggagacaaaggcatagacggtaaacca
gggccaaagggggaacctggaagccctggcccaaagggagacaaaggcaaagatggtcta
ccagggccaaagggagaaccaggaagtgttggcccaatgggagagaaaggaatagatggt
ctaccagggccaaagggaaaacaaggaagtgttggcccaatgggagataaaggaatagat
ggtctaccagggccaaagggagaaccaggaagtgttggcccaatgggagacaaaggaata
gatggtctaccagggccaaagggagacgcaggaagtgttggcccaatgggagacaaagga
atagatggtctaccagggccaaagggagaaccaggaagtcctggcccagtaggggagaga
ggcatagatggtctaccagggtcaaagggagaaccaggaagtcctggcccagtaggggag
agaggcatagatggtctaccagggccaatgggagaaccaggaagtcctggcccagtaggg
gagagaggcatagatggtctaccaggggcaaagggagaaccaggaaacattggccctgtg
ggaaaaagaggcatgagtggtctaccaggaccaaagggaaaccggggaagcattggccca
acaggggagagaggcatggatgggctaccagggccaaagggaaatccaggaagcattggt
cagactggggaaaaaggcataaaagggcaaccaggagcaaggggaaaacgaggaagcgct
ggctcagtgggagagagaggcatagatgggctaccagggcctaagggagaacctggaagc
attggcccaatgggagagaaaggcttagatggtctagcagggccgaagggtgaaccagga
agccctggtccaataggagagaaaggcatagatggtctaccagggccaaagggagaacca
ggaggcaatggctcagtaggagacaagtgcattgatgggctaccagggccaaagggagaa
cccggaagccctggcccgacaggagacaaaggcatagatggtctaccagggccaaaggga
gaaccaggaagtgttggcccaatgggagagaaaggcacagatggccttccagggccaaag
ggagaaccaggaagtgttggcccaataggagtgaatggaataaatggtctaccagggcca
aagggtgaacctggtgaaagaggagcagatggacacattgggccaaggggtcctccaggc
ctgaaaggagaacagggtgatacagtagtaattgactacgatggcagaatcttggaagct
ctcaaggctgcagggaaactcagattgacgggcccgccaggtccccaagggcccccaggc
ccccaaggagctccaggaccaaagggggaacttggattgcctggcccacctggcgttgat
ggagagaagggtcctaaaggttcgaaaggagaccaaggaagctctggactcataggacaa
aaaggagagaaaggagatgttggcatgagtggtctcccaggtccgaaaggattaaaagga
gaccaaggaaaccctggaatagcgggagagagaggagagacaggagaaatgggcttgtct
ggtccaccgggcattgatggaccaaaaggagaacctggcgctccctgtgagaaggatctt
gtgcagatcatagctgaaccaggacctcctggcgttccaggtctaccaggtccgccaggc
cctacgggtcctcaaggaatacaggggcataagggtccccaaggaattcaaggacacaag
ggctcagatggtgcaaagggtgcaaaaggtgaaagtggtcataaaggtgaaaaaggtgtc
cctgggccacatggtcctgctggtactcctgggcttatcggtttaccaggcaccaaaggg
gagaagggaaagccaggggaaccaggattagatggtttcccaggcctaagaggagaaaaa
ggagaaaaaagtgagagaggagaaaagggagaaagaggacttccaggtagaaaaggagca
aaagggcaaaagggagagccagggccgcctggattggatcagccttgtccagtgttcatt
tttaaaggggagccaggtttacctgaactggatggtgtggatatgctctgccctttggga
ccagatggattaccggtaccaggatgctggcacaagccacagatagaaatggaggagaaa
atgaaaaagaaaaagaagttgcagccttag
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