Podarcis muralis (common wall lizard): 114592885
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Entry
114592885 CDS
T06059
Symbol
COL5A3
Name
(RefSeq) collagen alpha-3(V) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
pmua
Podarcis muralis (common wall lizard)
Pathway
pmua04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pmua00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
114592885 (COL5A3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pmua00536
]
114592885 (COL5A3)
Glycosaminoglycan binding proteins [BR:
pmua00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
114592885 (COL5A3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
114592885
NCBI-ProteinID:
XP_028577014
LinkDB
All DBs
Position
2:complement(1121505..1248810)
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AA seq
1785 aa
AA seq
DB search
MAQLARRLICLLALLWHGLPRTGADGLVDVLQAFGVREGKNGVSIAAGICTQRNGSDESD
LAFRLENQTYFSAPTKQLFPDGSFPVDFSILATLRAVKGSQSFLLSVYDERGVQQLGVEI
GRSPVFLYEDQLGHPVPEDYPHFRRVNLADGKWHRIALSVEGGNVSLSIDCEDPAILPLK
RGMQPIVSVDGATLLAARRPDEDVFEGDLQQLLIVPDPAAAAHYCQHYMPDCDRQLTYVL
HAQDPEENIPRRKGKKGKGKRKGKGKRKGRGKKKRNKESPETSSLTPAPGQYEIPTRATP
TKAATESWEENPGVITATTVAVGFNLTDNYEDLFGEQYEIGEDSDLDANGTYRAYEERLD
YRDREYEDYYDRRDANEEERYDPAERSEDTLQLPPEKNLKGEKGEPAIIEPGRRFEGPAG
YPGPQGETGPMGQGGPAGLPGDPGERGPPGLPGLPGADGIRGPPGTMIMLPFQFGGDSAK
GPSVSFQEAQAQAILQQAKLSMKGPPGPMGLTGRPGPLGLPGNSGLKGDSGDPGPQGSPG
IQGSIGPPGKIGKRGRSGADGARGLPGETGPKGDRGFDGLPGLPGEKGNRGDVGTPGPPG
ARGENGPKGSDGAQGPRGQPGEAGIRGLTGSRGAPGPPGQMGVSGIDGAPGHKGNLGIQG
EPGPPGQQGNPGSQGLPGPQGPVGLPGEKGPQGKPGIPGMPGVDGPPGHPGREGPAGEKG
AQGLSGAAGPIGYPGPRGVKGAFGMRGLKGSKGEKGEDGFPGFKGDMGPKGDRGDAGPLG
VRGEDGPEGLKGQAGPVGEAGSSGPAGEKGKLGVPGLPGYPGRQGPKGSTGFPGPLGLIG
EKGKRGKAGQAGQTGQRGPPGLPGERGLPGPTGKPGPKGDSGHDGAPGIVGEKGPSGPQG
PNGFPGPKGPPGPAGKDGLPGHPGQRGEPGFHGKTGPPGPAGVVGPQGNSGETGPMGERG
HPGSPGPPGEQGLPGAAGREGAKGDPGPSGIPGKNGPPGMKGFTGARGPAGETGPTGLKG
AEGPPGPQGPTGSPGERGPSGAAGGIGLPGRGGNQGPPGPAGEKGAPGERGPMGPSGHDG
IPGPLGLPGPAGPPGLAGEDGDKGEMGGPGQKGSKGDKGEAGPPGPTGIQGPIGHPGPAG
ADGEPGRRGQQGMFGQKGDEGARGFPGVSGPSGLQGMPGPPGEKGESGDVGPMGPPGAPG
PRGPQGPSGGDGPQGQPGGLGQPGAVGEKGEAGEAGDPGPPGEPGRQGVKGDVGEKGDSG
QSGAAGPPGKKGPPGEDGAKGNLGPIGFPGDPGPSGDPGPPGLDGVSGEKGDIGDPGLPG
PPGASGEPGPPGSPGKRGPFGPAGREGRQGEKGAKGEPGTDGPLGKMGPVGPQGPPGRPG
SEGLRGIPGPAGEQGLLGAPGQAGPPGPVGPTGLPGLKGDPGYKGEKGHAGLIGLIGPPG
EMGEKGDQGLPGNQGTPGPKGDPGIIGPFGPPGPPGSPGLSGPLGQKGSKGSPGPIGPKG
DPGSAGPPGPPGRPAELREPLPLESGRKSRRDWELGDQGDAPGEMDADPDAEGMAEVLAA
LSSLRDEVEQMRCPLGTQESPARVCKELQFCHPHLTDGEYWIDPNQGCSRDAFKVFCNFT
AGGETCLFPDKKVEAVRLAAWSKEQPGSWFSTFKRGKKFSYVDADGNPMQVTQLTFLRLL
SAIAHQNFTLLCQNVAAWYEADTNSHTRALHFLAFNGVELMHNSTEALVQALYDGCQVRK
GQERTVLQVVTQRVEQLPLADVAVQDFGDTNQKFGFELGPVCFSG
NT seq
5358 nt
NT seq
+upstream
nt +downstream
nt
atggcacagctggcgaggcgcctgatctgcttgctggctctcctgtggcacggacttccc
cggacgggggcagatggccttgtggatgtgctccaggcgtttggtgtgcgagagggcaaa
aatggggtctctatcgctgctggtatctgcacccagagaaatggctctgatgaaagtgat
cttgccttccgcctagagaaccagacatatttcagcgccccaactaagcagctctttcct
gatggctccttcccagtggacttctcaatactggctactctgcgagctgtcaaaggaagc
cagtcgttcttgctctctgtatatgatgagcggggagtacagcaacttggtgtagagatc
ggacggtctccggtcttcctctatgaagaccagcttggccacccagtgcctgaggactat
cctcactttcgccgagtcaacttggctgatggcaagtggcatcgcattgctctgagtgtg
gaaggtgggaatgtatctttgagtattgactgtgaagaccctgcaatacttcccctaaag
cgaggcatgcagccaattgtcagtgttgatggtgcgaccttgcttgcggctcgccggccg
gatgaagatgtttttgagggtgatctccagcagctgctgattgtgccggatccagcagct
gcagcccactattgtcagcattacatgcctgattgcgacagacagctcacctacgtgttg
cacgcccaggatcccgaagagaacattccccgcaggaagggcaagaagggcaagggcaag
agaaagggcaagggcaagaggaaagggagaggcaagaagaagaggaacaaggagtcgccg
gagacgtcctcgctcactccggcccccggccagtatgagattccaactcgagctacacct
acaaaggcagccactgagtcctgggaagagaatcctggagttattactgcaaccactgtc
gcagttggctttaacctcacagacaactatgaggacctttttggagaacagtacgagatt
ggtgaggactcagacctggatgccaatggcacttacagagcatacgaggagagacttgac
tacagagacagggaatatgaggactactatgaccgaagggatgcgaatgaggaagagcgg
tatgatccggctgagcgcagtgaagacaccctccagctccccccggaaaagaatctgaaa
ggagagaaaggggagccagccatcatagagccaggcaggcgttttgaggggccagctggt
tacccaggtccacagggtgagacgggtccaatgggacagggagggccagcaggattgcca
ggagatcccggtgagcggggacccccaggactcccaggccttccaggagctgatggcatt
cgtgggcctcctgggacaatgattatgttaccgttccagtttggtggtgactcagctaaa
ggtccctctgtgtccttccaagaggcccaggcccaggctattttgcagcaagccaagcta
tccatgaaaggtccccctggccccatgggactaacagggcggccaggcccattgggtctt
ccagggaattctggtctgaaaggagactcaggtgatcccggtccacagggctcacctggg
atccagggatcaataggacccccagggaaaattggcaagcggggtcgctcaggagcagat
ggtgccagaggacttccaggagaaactggacctaagggtgacaggggctttgatgggctc
ccaggacttcctggagaaaagggaaatcgaggagatgtaggcacgccaggcccccctgga
gctcgtggtgagaatggccccaagggctctgatggtgcgcaaggccccagaggacagcct
ggggaagctggtatccgtggtttgactggctcacgaggtgctcctggtcccccaggccag
atgggtgtcagcggtattgatggggcccctggacacaaagggaacttgggcatccaaggt
gaaccaggcccccctgggcagcagggaaaccctggatctcagggtctgcctggtccccag
ggtcctgttgggcttccaggcgaaaagggcccacaaggaaaaccagggataccaggaatg
cctggggtggatggacctccaggtcatcctggaagagaagggccagctggggagaaagga
gcacagggtctgtctggtgcagcaggtccaataggctacccaggtccccgtggagtcaag
ggggcatttggcatgaggggcctcaaaggtagcaaaggtgagaagggagaagatggattt
cctggtttcaagggtgacatggggccaaaaggtgaccggggtgatgctggcccattgggt
gtacgtggtgaggatggccctgaggggctgaaagggcaggcaggacctgtgggggaagct
ggttcttctgggccagctggtgagaagggcaaattgggggtgccgggcctaccaggatac
cctggacgccagggacctaagggctcaactggatttccagggcctctgggcctcattgga
gaaaaaggcaaacggggcaaagctggccaggctgggcagacgggacaacggggccccccg
ggtcttccaggtgaacgtggtttgccaggacccacaggaaaaccaggaccaaagggtgat
tcaggccacgatggagccccaggaattgttggggaaaagggtccctccggtccacagggc
cctaatggattcccaggccccaagggcccacctggccctgctgggaaggatggtttaccg
ggacatccaggtcagcgtggtgagccgggatttcatggcaaaactggcccaccaggacct
gctggagttgtgggaccacagggaaactctggagaaactggtcccatgggagagagaggc
cacccaggctcccccggtccccctggagaacaagggttgccaggtgccgccggaagggaa
ggtgccaagggtgatcctggacctagtggcatcccaggcaaaaatggccctcctggaatg
aaaggcttcactggggctcgaggtcctgctggggagactggaccaactgggttgaagggg
gctgaagggccccctggtcctcaaggtcccacaggttcccctggtgaacgtggcccctca
ggagcagctgggggtattgggctacccgggcgagggggcaaccaaggacctcctggccca
gcaggggagaaaggggcaccgggtgagcgaggcccaatgggcccatctggccatgatgga
atcccaggcccattgggtctgccgggcccagctggaccaccaggacttgctggagaagat
ggtgataagggagagatgggtggcccaggacaaaagggaagcaagggcgacaaaggagaa
gcgggtcccccaggacctactgggatccagggtcctattggacatccaggccctgcagga
gcggatggagagcctgggcgccgagggcagcagggcatgtttggccagaaaggagatgaa
ggagcccgtggattcccaggtgttagtggcccatctggtttacaagggatgccagggccc
ccaggggagaagggcgagagtggcgatgttggcccaatgggcccaccaggagctccaggg
ccccgaggcccccagggtcccagtgggggtgatggcccacaggggcaacctggtgggctg
ggacagccaggtgctgttggtgaaaagggtgaagcaggggaagcaggagaccctggacct
ccaggggagccaggccggcaaggggtaaagggtgatgttggtgaaaaaggagattctggc
caatccggagctgcagggccccctggcaagaagggccccccaggagaggatggagccaag
gggaacctgggtccaataggattcccaggtgacccaggcccatccggagatcctggtcct
ccaggtctggatggagtttctggtgagaaaggtgatataggggatcctggacttccagga
ccccctggagcttctggggagccaggtcctcctggatcaccaggaaagaggggacctttt
gggccagctggccgtgaaggtcgacagggtgagaaaggagccaagggggagcctggcaca
gatggacccctggggaagatggggcctgtgggtccgcagggacccccaggccgacctggc
tcagaaggtctacgtggaattccgggtcctgctggtgaacaaggtctcctgggagcgcct
ggccaggcagggccaccggggcctgtgggtcccacggggctcccaggccttaaaggtgat
cccggctacaaaggagagaagggtcatgcaggactcattgggttgattgggcccccaggt
gagatgggtgagaaaggtgaccaggggctgccagggaaccagggaacaccaggccccaag
ggcgaccctggaatcattggaccctttgggcccccaggcccacctggatctcctggcctc
tcaggacctctgggacaaaaaggcagcaaaggctcaccagggcctattggaccaaaaggt
gatccaggatctgcaggacctccagggccaccaggtcgacctgctgagctgcgggagccc
ctgcctttggagagcggccgcaagagccgccgcgactgggagctcggggatcagggagat
gcacccggggagatggatgccgaccccgatgctgaagggatggcagaggtcctagcagcc
ctgagctccttgcgtgacgaagtggagcaaatgcggtgtccactgggcactcaggagagc
ccagcccgggtttgcaaggagcttcagttttgccacccccacctcacagatggtgaatat
tggattgacccaaaccaaggctgcagccgggatgccttcaaagttttctgcaacttcaca
gctgggggggaaacttgcttatttcctgacaagaaagttgaggcagtgcgactcgctgcc
tggagcaaggagcaaccaggaagctggttcagcacattcaagaggggcaagaagttctcc
tatgtggatgcagatggcaaccccatgcaggttacccagctcacatttctgcgcctgctt
agtgccattgcacaccaaaacttcaccctcctctgccaaaatgtggctgcctggtatgag
gccgacaccaacagccacactcgggctttgcattttcttgccttcaatggtgtggagctg
atgcacaacagcacagaagcccttgtacaagccttatatgatggctgccaggtacgcaaa
ggccaggagcggacagttctgcaggttgtgacacaacgcgtggagcagcttccattggcc
gatgtggctgttcaggatttcggggacaccaaccagaagtttggctttgagcttgggcct
gtctgcttcagcggctga
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