Podarcis muralis (common wall lizard): 114597512
Help
Entry
114597512 CDS
T06059
Symbol
COL17A1
Name
(RefSeq) collagen alpha-1(XVII) chain
KO
K07603
collagen type XVII alpha
Organism
pmua
Podarcis muralis (common wall lizard)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
DUF2868
Motif
Other DBs
NCBI-GeneID:
114597512
NCBI-ProteinID:
XP_028586195
LinkDB
All DBs
Position
5:54221791..54291066
Genome browser
AA seq
1427 aa
AA seq
DB search
MAAVTKKNKRDGTEVTERLITETVTTRLTSLPPKGGSTSSLKSTAYSGGGGVEKRTYTHG
SSYVTASGNARTNTSSSSYKQAITPSSTLTKSPGSTFERKTYSTRHAAYEGSSSANSSPE
FPRKDFGSSATRGRSQTRESEIRVRLQSASPSTRWTELDDVKRLLRGSRSASASPTRSPS
STLPIPKKAVVETKMVTESSQSVSGTYDTTILNAALPPYMWSSTLPAGSSLGGYHNNMTQ
SSSLMNTAAHSTGSVFGVPNNLAPSSPALHAGLSSSSTVFGVQNNLAPSTLGVANAATTT
AATAYGAKKNTTQSYGVTSTGVSTSSTTAATTTGSQNDDILRKDCKFLLLEKENVAPKKD
VELLIMTKDSGKVFSASGTGLSGGCYSEDTLKKDKQAFSSSYAGDSYLKSETNGGLRSIS
TKDKATYAEIRGDDGCGGAGAAPAWCPCASCCSWWKWLLGLLLAWLLLLGLLFGLIALAE
EVKKLRSRVDILESQASRWQVQPNTVENVHAVHSERYKAVQGDISDDQLWFLMKKRLDVE
RSKGYFQGEPGQKGDMGTPGIPGIPGREGPKGQKGSMGETGMEGPMGQRGREGPPGPRGE
PGAPGFGQKGDRGTPGEPGPQGPPGAPGSVGLKGMMGSPGPHGPPGPPGLQGFRGEAGIP
GGKGERGAPGVPGTKGISRGKGPRGLTGEPGSRGLPGPPGEAGAKGSVGPPGPDGRQGSR
GEQGLMGLPGPRGPPGPPGDAGQPGLTGLQGPPGLTGNPGRPGAKGEPGAPGRVTTSDGA
STISVPGPPGPPGAVGPQGPPGVPGPIGPAGLPGSQGPRGEKGDPGEATIVETVRSGVGA
SAAQVVPEMQGPPGPPGPPGPPGAFVQGPPGPRGIPGEPGQPGLPGASVSGAGVAVQGPP
GLPGPPGPKGEKGDAGVPGAPGIPGGAGSRASQGLPGPPGPPGPPGLGISGISSARDIQL
MIAEYLQSDSASYLVGPPGPPGPPGMITAIGEESLDYTELARRVVSYMSGVDVRQYFIGP
QGPPGPPGPPGLGGDSLSVSLDYDELTRRVVSYITNSEFDRFVGPPGPPGPPGSALSSIT
AEDISSYLQSLGYFTLSGPPGPPGPPGPPGPPGLSGSGLVSYGDDLWTDQFRSDLIKYLT
SDDIRGIIRGPPGPPGPPGIGGDGSLMAESYRRSLNSDGSYGRSASSATSYDASLATGGS
YSSSLGSNGAYGGSLGAGGSLGADGSLGAGGSLGAGGSYGGSLGADGSYGGSLGADGSYG
GAIGAGGSYGAEVGGSYGSSTGAGGSQMRSTGAGGSYSGSFAGALDYNELAARVSENIQS
RGLLQDMMTYAVQGPPGPPGPPGIPGISKVFASYGNITADLMEFFRTYGTIPGAPGQKGE
IGFPGPKGDIGPMGPPGRQGPRGPRGEKGEKGEAVYVGRRKRRSIGV
NT seq
4284 nt
NT seq
+upstream
nt +downstream
nt
atggccgctgtaacaaagaaaaacaagcgggatggaacagaagtcacagagagacttatt
acagaaactgttaccaccagactgacatctcttcccccaaaaggaggcagtaccagcagc
ctcaaatcaacggcttatagtggaggaggtggagtggagaaaaggacatacacccacggc
agcagttatgtgacagccagtggaaatgctagaacgaatacctcctcttcctcctacaag
caagccatcactccttcttctactcttaccaaatcaccaggctcaacctttgaacgaaaa
acctattccactcgccatgcagcatatgaagggagctccagcgcaaattcctctccagag
tttccaagaaaagattttggttcctctgctaccagggggcgaagccaaactcgtgagagt
gaaattcgagtgaggctgcagagtgcttctccatcaaccaggtggacagaattggacgat
gtcaaacgactacttcggggaagtcggtcagctagtgctagcccaactcggtccccatca
agcacactcccgatacctaaaaaagctgttgtggaaaccaaaatggtgacagagagcagc
caatcagtgtcagggacatacgacacgaccatcttgaatgcggcactcccaccatacatg
tggtcctccaccctgcctgcagggtcgtctctcggtggctaccacaacaacatgactcaa
agctcctctttgatgaacacggcagcacattctactggatcagtgtttggtgtcccaaac
aacttggctcccagttccccagctctgcatgctggtctcagcagttcttccacagtattt
ggtgttcagaacaacctggctccaagcacacttggtgttgccaatgctgcaaccacaact
gcagcaacagcatatggagcaaagaagaatacaacccagagctatggcgtgactagcact
ggtgtgtccacctcatctacaactgctgccactaccacaggctctcagaatgatgacatc
ctgcgcaaggactgcaagttcctgctcctagagaaagagaacgtggctcccaagaaagat
gtggagctgttgatcatgaccaaggacagtggaaaagttttcagtgcttccggcactggg
ctcagtggaggctgttattcagaagacaccctaaagaaagacaagcaggctttctcttcc
tcttatgctggagattcctatctgaaatcagaaacaaatggaggactaagatctatttca
acaaaggacaaagctacttatgcagaaatccgaggtgatgatggatgtggtggagcagga
gctgctccagcctggtgcccctgtgcctcctgttgcagctggtggaagtggctcttaggc
ttgctgctagcctggctgcttctccttggtctactctttgggcttattgctctggcggaa
gaagtgaagaagctgagatcccgggtggatatccttgaatcccaagccagccgctggcag
gttcaacccaacacagttgaaaacgtacatgctgtacattctgagagatataaagcagta
cagggtgatattagtgacgatcagttgtggtttttaatgaagaagaggctggatgtggag
cgaagcaaaggttatttccaaggagaaccaggacagaaaggcgatatgggcaccccaggt
attcctggcatccctgggcgtgaagggccaaaaggacagaaaggcagcatgggtgaaacc
ggcatggagggtcccatgggacaaagagggcgagaggggcctcctggacctcgtggagag
cctggtgcacctggatttggacagaaaggtgacagaggtactcctggcgaaccaggacct
caaggtccccctggtgccccaggttctgttggtctcaaaggtatgatgggttcaccaggt
ccccatggtcctcctggtcctcctgggcttcaaggatttagaggtgaagctggtatccca
ggtggtaaaggtgaaagaggagccccaggagtacctggaaccaaaggtatatcaagggga
aaaggaccccgtggtcttacaggtgaaccaggttcccggggactacctggacctccaggt
gaagcaggagctaaaggatcagtgggtccaccaggaccagatggacggcaaggctccaga
ggagagcaaggtcttatgggattgccaggcccacgaggcccaccaggacctcctggagat
gcagggcaaccaggtctcacaggacttcaaggaccaccaggactcacaggcaatccaggc
cgaccaggagctaaaggtgaaccaggcgcaccaggccgggttactacttcagatggtgca
tcaactatttctgtcccaggacctccaggtccaccaggggctgttggtcctcaaggccca
ccaggtgttccaggtcctattggcccagctggacttcctggatctcaaggtcctcgtggt
gagaaaggtgacccaggtgaagccaccattgtggaaaccgtccgttctggagttggtgct
tcagctgctcaagtggtaccagagatgcaaggaccgccaggaccccctggaccgccagga
cctccaggcgcttttgttcaaggcccaccaggacctcgtggcataccaggtgaaccaggt
cagccaggtctaccaggagcctctgtgtcaggtgctggagttgccgtccaaggaccacct
ggattaccaggaccacctgggcccaaaggagagaaaggtgatgcaggtgtaccaggagct
ccaggcatccctggaggagctggatcaagagcatctcagggtcttccaggtcccccaggt
cctcctggacctccaggcctaggaatcagtggaattagttctgcccgagacattcagctg
atgatcgctgagtacctgcaaagtgacagtgcatcctatctggttggacctcctggtcct
ccgggaccaccaggaatgattaccgccattggtgaggaatccttggactacactgaattg
gcccgccgtgtggtgagctacatgtctggagtggatgttcgccagtatttcattggaccc
caaggtcccccaggaccccctggcccccctggactgggaggagacagcttatccgtgtcc
ctggactatgatgaattgacaagacgcgttgtcagctatataacaaactccgaatttgat
cgctttgtagggccacctgggccaccaggcccaccaggcagtgcgctttcctccatcact
gcagaggacatctcctcctacttacaaagtttggggtacttcacactctctggacccccc
ggaccaccaggtccaccaggccctccaggaccacctggcttgtcaggaagtggccttgtt
tcctatggcgatgatctttggactgaccagttcagaagtgacttgattaagtaccttact
agtgacgatattcgtggcatcatcagaggaccccccgggcctccaggaccacctggtata
ggaggagatggcagcttgatggctgaatcttacagaaggtctctaaattcagatgggtcg
tatggcaggtccgcaagttctgccacatcctatgatgcatcacttgccacagggggatca
tacagcagctcattgggaagcaatggagcatatggtggatctcttggagctggtggatct
cttggagctgatggatctcttggagctggtggatcacttggagctggtggatcatacggt
ggatctcttggagctgatggctcttatggtggatctcttggagctgatggttcttatggt
ggagcgattggagcaggtggatcttacggtgctgaagtgggtggatcttacggtagttca
actggagcaggcggatcacagatgagatctacaggtgcaggaggatcctatagtggatca
tttgctggggcactggattacaatgagttggcagccagagtgtcagaaaacatacaaagc
cgagggcttctgcaggacatgatgacttatgctgtgcaaggaccacctgggcctccaggg
cctcctggcattccaggcatcagcaaagtgtttgcatcctatggcaatatcactgcggac
ctcatggaattcttcagaacttatggaactatcccaggtgcacctggacagaaaggagag
ataggattcccaggacccaaaggtgacataggaccaatgggccccccaggccgccaaggc
ccaagaggaccaaggggtgaaaagggcgagaaaggtgaagcagtgtatgttggccgaagg
aaaaggagaagcattggggtctaa
DBGET
integrated database retrieval system