Podarcis muralis (common wall lizard): 114598544
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Entry
114598544 CDS
T06059
Symbol
RC3H1
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
pmua
Podarcis muralis (common wall lizard)
Brite
KEGG Orthology (KO) [BR:
pmua00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pmua03000
]
114598544 (RC3H1)
04121 Ubiquitin system [BR:
pmua04121
]
114598544 (RC3H1)
Transcription factors [BR:
pmua03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
114598544 (RC3H1)
Ubiquitin system [BR:
pmua04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
114598544 (RC3H1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
Prok-RING_4
zf-CCCH
zf-C3HC4_3
zf-C3HC4
zf-C3HC4_2
zf_CCCH_4
zf-CCCH_4
FYVE
zf-RING_10
PaaA_PaaC
Baculo_IE-1
Vesi_VP2
Cupin_1
zf-RING_4
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
114598544
NCBI-ProteinID:
XP_028588154
LinkDB
All DBs
Position
6:complement(2929690..3000628)
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AA seq
1133 aa
AA seq
DB search
MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD
IEHLPVNSALLQLVGAQVPEQQPITLRSGAEDTKHYEEAKKCVEELALYLKPLSSARGVG
LNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLENGLVAVRTVVHGLVDYIQNHSKKGADQQQPPQHSKYKTYMCR
DMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQLNEVGLSAAAILSDE
GSMDLPNRKPSALPNGIVSTGSAVTQLISRGTDSSYDSALKPGKIDHLSSSAPGSPPDLL
ESVPKSSLSALPVNSHPVAPRGPPDLPPISVGKQLQMVPRGSQLYPAPQTDVFYPDPRGA
GPPFESPPYQSGVYYPAAQPSQCMSRFVRPPPSVPEPGPPYLEHYPPYLQDRMVNSQYSA
QPQQYPPMGQPMYPPHYDSRRMYPPPQPYQREEIIRGSPVPIEIPPPAVSPYVPETRDRY
PQMEGYYPVGPHLSQIRPSYHREPYSRPPPQPHPSLDDLHRRRKEIMAQLEERKVISPPP
FAPSPTLPHSLHTDEYIDEDMKVAGKYKGNDYSQYSPWSCETIGSYIGTKDAKPKDTAAV
GLVEMGNVDSKGMRDQRLDLQRRAAETGDDDLIPFGDRPTVSRFGAISRTSKAMYQNPGP
MQAMAVQGASTKPGNISDYSPYETHSAWGGSPYSPHQNIPSSQGRPSDRERLSMTDVAGH
GKPLPSSEREQQLRLELQQLNHQISQQTRGLEAVSNRLLLQREATPLAGQPQPPPPKWPG
MISSEQLSLELHQVEREIGKRTRELSMESQSSLEVKSKVSASKQTENGQQSKVPAEDVAL
TFSSDVPNGAAPAQESIGLLSSKTAALSLSEDTEAGGGDLDAQRTGATPTSAP
NT seq
3402 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtacaagctccacaatggacggattttctttcctgccctatttgcacacaaaca
ttcgacgaaacaatccggaagcctatcagcctgggctgtggccacacagtatgcaagatg
tgcctgaacaagctccaccggaaggcatgccccttcgaccagaccactatcaatacagac
atcgagcaccttcctgtgaactcagccttgctgcagcttgtgggtgctcaggtgccagaa
cagcagccaataacgctccgtagtggcgctgaagataccaagcattatgaggaagccaag
aaatgtgtggaagaactagccttgtaccttaaaccactcagcagtgcaagaggtgtggga
ctgaacagcaccactcagagtgtactcagtcgccccatgcaaaggaaacttgtgacattg
gtccactgccagttagtggaggaagaagggcggatcagggctatgcgtgcagcacgatct
ctgggtgaaagaactgtcacggagctcattcttcagcaccagaacccccagcaactttct
tccaacctctgggctgcagtgagggccagaggctgccagttccttggaccagcaatgcaa
gaggaagctctcaagttagttcttttggctttggaagatggatctgctttgtctcggaaa
gtcttggttctctttgtggtacagaggttggagccacgatttcctcaggcttctaaaacc
agcattgggcatgttgtccagcttctatacagagcctcctgtttcaaggtgactaaacga
gatgaggattcctccctgatgcagttaaaggaggagttccgaacctatgaagctctgaga
cgagaacacgattcccagattgtgcaaattgctatggaggctggtttgcgcattgcccca
gatcagtggtcttcattgctatatggagaccagtcccacaaatcccacatgcagtcaatt
attgacaagttgcagaccccagcctcttttgcacagagtgttcaggaactaactatcgct
ctccagaggaccggtgacccagccaatctgaaccggcttcgaccccatctagaactcctt
gcaaatattgatcccagcccagatgccccaccacccacctgggagcagcttgagaatgga
cttgtcgctgtgcggactgtggtacacgggctggttgattacatccaaaatcacagcaag
aaaggagcagaccagcagcagcctcctcaacacagcaaatataagacatatatgtgccga
gacatgaagcagagaggaggttgcccccgtggggccagctgcacctttgcacactcgcag
gaagaactagaaaaatttcgtaagatgaacaaacgtctggttcctcgaagacccctgagt
gcctccttaggccagctgaatgaagtgggcctatcggcagcagctatcctctcagacgaa
gggagcatggacttgcccaacagaaaaccctctgccttgccaaatgggattgtttcaaca
ggcagcgcagttacacaacttatctctcgcggaaccgactccagttatgattcagccttg
aagcccgggaaaattgaccatcttagcagcagtgcccctgggtcacctcctgacttgctg
gagtccgttcccaagagttctctatctgccttacccgtgaactctcacccagtggccccc
cgaggacctccagacctgcctccaatatctgttgggaagcaactccaaatggtgccacga
ggctcccagttgtatccagctccacaaacagatgtgttctacccagatcctcggggagca
ggtccaccatttgaatctccaccttaccaatcaggtgtgtattatcctgcagctcagcct
tcgcagtgtatgtctcgatttgtccgacctccgccgtctgttcctgaaccaggccctcct
tatttagaacattacccaccatacctccaggaccgcatggtgaattctcagtacagtgcg
cagccccaacaatatcctcctatgggacaacccatgtaccctccacattatgacagccgg
cgcatgtacccccctccccagccgtaccagagggaagaaatcatcagaggaagccctgtg
cccatcgaaattcctccaccagctgtgtctccatatgtacctgaaacaagagacagatat
ccgcagatggaaggctactatccagttggtccacatctgagtcagatcagaccttcatat
cacagggagccttatagccggcctccccctcagcctcatcccagtctagatgatttgcac
cgacgacgaaaggagatcatggcccagctagaggaaaggaaggtcatctccccacctccc
tttgcaccatcaccaactctgcctcactctttacacactgatgagtatatagatgaagat
atgaaggtagctggcaaatacaaaggaaatgattacagccagtactctccctggtcatgt
gaaaccattggctcctacattggaaccaaagatgcaaaacccaaagacacagcagcagtg
ggacttgttgagatggggaacgtggatagcaaggggatgcgagaccagcgtttggatttg
cagaggagagcagcagagactggtgatgatgatcttattccatttggagatcgacctacg
gtatcaaggttcggtgccatctcacgtacatctaaggcgatgtatcagaaccctggtccc
atgcaagccatggcagttcaaggggcatcgacaaagccaggcaacatttcagattacagc
ccttatgaaacacacagtgcatggggaggttcgccatattcaccccatcaaaacatacct
tcttctcagggacgccctagtgacagggagagattgtctatgacagacgtggctggccat
gggaagcctttgccctcatctgagagggaacagcagcttcgacttgaactgcagcagcta
aaccatcagattagccagcagacacgaggactggaggctgttagtaacaggctgctgttg
cagagggaggcgacccccttggcaggccagccgcagcccccacctcctaagtggcctgga
atgatctcaagtgaacagctgagcttggagctgcaccaggtggagagggagatcgggaag
agaacccgggagctgagcatggagagtcagtcttcattggaagtgaaaagcaaagtgagt
gccagtaagcagacagaaaatggacagcaaagcaaggtaccagctgaggatgttgcactt
acattcagcagtgatgttccaaatggagcagctccagcgcaagaaagcattggcctcctc
tccagcaaaactgcagctctgagcttgtcggaagatactgaagcgggaggaggcgacttg
gatgcccagaggacaggagcaacacctacatctgctccctga
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