Podarcis muralis (common wall lizard): 114598695
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Entry
114598695 CDS
T06059
Symbol
COL11A1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(XI) chain
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
pmua
Podarcis muralis (common wall lizard)
Pathway
pmua04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pmua00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
114598695 (COL11A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pmua00536
]
114598695 (COL11A1)
Glycosaminoglycan binding proteins [BR:
pmua00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
114598695 (COL11A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_1
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
114598695
NCBI-ProteinID:
XP_028588480
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All DBs
Position
6:19425743..19684357
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AA seq
1868 aa
AA seq
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METRRTWSTRWKTKRWFWDSAWPALLVAWMLLLEAVEVRGAEPVDVLKALEFHNSPEGIS
KTAGICINRRNSKGSDVAYRVSKNAQLSAPTKQLYPGGNFPEDFSILFTVKPKKGIQSFL
FSVYNEQGIQQVGVEVGRSPVFLYEDQNGKPAPEDYPLFRTVNIADGKWHRVAISVEKKS
VTLIVDCKKKTTKPLGRSDRAIVDTNGITVFGTRILDEEVFEGDIQQLLIVGDPRAAYDY
CEHYSPDCGSPVPNAPQAQEPQVDEYGTEDLIEYDYDYGDPDYKDYKDLDSVTEGPPLYD
EIVTQTEKKKKAPKKKRTVAANSKSNSPKFTLKKYESFSSKKKKSYQASAKSKLGANIVD
EYNEYNVAETDYGTSEGYQTETPSRTTGPNEQNPVEEVFAEEYVTGEEYNSETKKTEETD
YGNRGVDRSESEVVVDGEVGEYDFYEYKEYEEKPTNPTNEEFGPGVPAETDITETSVNGH
GAYGEKGQKGEAAVIEPGMLIEGPPGPPGPPGLMGPSGTQGPTGPPGDPGDRGPPGRPGL
PGADGLAGPPGTMLMLPFRFGGGGGDKGPAISAQEAQAQAILQQARIAMRGPPGPMGLTG
RPGPVGGPGGSGAKGDSGDPGPQGPRGIQGPAGLPGKPGKRGRPGADGARGMPGEPGSKG
DRGFDGLPGLPGEKGNRGDRGPQGSPGSPGEDGMRGEDGEVGPRGLPGEAGPRGLLGPRG
TPGPPGQPGISGIDXPQDQKGNLGPQGEPGPPGQQGITGPQGLPGPQGPIGVPGEKGPPG
KPGLAGLAGADGPPGHPGKEGQSGEKGSLGPPGPQGPIGYPGPRGVKGADGVRGLKGGKG
EKGEDGFPGFKGDMGLKGDRGEVGPLGPRGEDGPEGPKGRSGPTGDPGGAGQAGEKGKLG
VPGLPGYPGRQGPKGSTGFPGFPGSNGEKGARGLHGKPGPRGQRGPTGPRGSRGPRGPTG
KPGPKGTAGSDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQG
KTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISG
KDGPPGLRGFPGERGLPGAQGGAGLKGGEGPQGPPGPIGSPGERGPAGTAGPIGLPGRPG
PQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKG
SKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGPRGFPGPPGPIG
LQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPSGADGPQGPPGSVGSVGGVGDKGEPG
EAGNPGPPGEAGTGGPKGERGEKGEAGPPGAAGPAGIKGPPGDDGPKGNPGPVGFPGDPG
PPGEPGPAGTDGTGGEKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKG
AKGEPGSEGAPGKTGPVGPQGPSGKPGPEGLRGIPGPVGEQGLPGAPGQDGPPGPMGPPG
LPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGVTGAKGDGGIPGSAGPLG
PPGPPGLPGPQGPKGSKGSTGPGGQKGDGGLPGPPGPPGPPGEVIQPLPIQSPKKTRRSS
DAMMSDAADSILDYTDGMEEIFGSLNSLKQDIEHMKYPMGTQNNPARTCKDLQLCHPDFP
DGEYWIDPNQGCSGDSFKVYCNFTAGGETCIYPDKKSEGVRISSWPKENPGTWFSEFKRG
KLLSYVDAEGNSINMVQMTFLKLLSASARQNFTYNCHQSVAWHDVSSDSYDKALRFLGSN
DEEMSYDNNPYIKVLHDGCATRKGYAKTVLEIDTPKIDQVPIFDVMINDFGDQNQKFGFE
IGPVCFLG
NT seq
5607 nt
NT seq
+upstream
nt +downstream
nt
atggagacgaggcggacatggtccacaaggtggaaaacgaaacggtggttctgggactcc
gcttggcccgcgctactcgtcgcttggatgctcctgctggaggctgtggaggtcagggga
gctgaaccagtcgacgtgctcaaagcattagagtttcacaattcaccagaaggaatatca
aaaacagcaggaatttgcataaacagaaggaattccaaaggatcagatgttgcctacaga
gtttcaaaaaacgcacaactcagtgctccaaccaaacaattgtacccaggtggaaacttc
cctgaagacttttcgatactatttacagtgaaacctaaaaaagggatccagtcctttctt
ttttctgtctacaatgaacaaggcatccagcaagttggtgttgaggtgggcagatcgcct
gtcttcctgtatgaggatcaaaatgggaagcctgcaccggaagattatcccctcttcaga
acggtcaacattgctgatggaaagtggcatcgggtagccattagtgtggagaagaaatcc
gtcactctgattgtggactgtaagaagaaaaccacgaaaccacttggcaggagtgaccga
gcaattgttgacaccaatggcatcacagtctttggaacaaggattcttgatgaggaagtt
tttgagggtgatatccagcagctgttgattgtcggcgatcccagagcagcctatgactat
tgtgaacattatagcccagactgtggttcccctgtgcccaatgctcctcaagctcaggaa
cctcaggttgatgagtatggaactgaagatttaattgaatatgactatgactatggagat
ccagattataaagattataaagaccttgactctgtaacagagggacccccactgtacgac
gagattgtcacacagactgagaaaaagaaaaaagccccaaagaagaagaggacagtggct
gctaactcaaagagcaactccccaaagttcacactcaaaaaatatgaatcattttcatcc
aagaagaagaaaagctatcaagcctcagcaaaaagcaaactaggggccaacattgtcgat
gaatataatgaatataatgtggctgaaactgactatgggacctctgagggctaccagact
gagactccgagccgaacgacgggaccaaatgagcaaaatcctgttgaagaagtatttgct
gaagaatacgtaacaggagaggagtataactctgagactaaaaaaactgaggaaacagat
tatggaaacagaggagtagaccgcagtgaatctgaagttgtggtagatggagaagtaggc
gaatatgatttttatgaatataaagaatatgaagagaagccaaccaaccctactaacgag
gagtttgggcctggtgttccagcagagaccgatatcacagaaacaagcgtgaatggccat
ggagcctatggggaaaaaggacagaagggcgaagcagctgtgattgaacctgggatgctt
attgaaggaccaccaggacctccaggacctccgggtcttatgggtccctcaggaacacaa
ggccccactggacctcctggtgacccaggcgataggggcccacctggacgtcctggtctc
ccaggagctgatggtttagctggacctccaggtaccatgttaatgttaccgttccgcttt
ggtggcggtggcggcgacaaaggcccagccatctcggcacaggaagctcaagcacaagct
atacttcagcaagccaggattgccatgaggggacctccaggccctatgggactcactgga
agaccaggtcctgtgggcggtcctggtggttcaggagccaaaggtgacagtggagaccca
ggtcctcagggtcctcggggtatacaaggtccagctggtttgcctggaaaacctggcaaa
aggggtcgtccaggtgcagatggagccagagggatgccaggggaacctggttccaagggt
gacagaggttttgatggccttcctggtctacctggtgaaaaaggtaacaggggagatcgt
gggccacaaggatctcctggttctcccggtgaagatggaatgagaggcgaagatggcgaa
gttggaccaagaggtctcccaggtgaagctggtccacgagggttgctgggaccaagagga
acacccggtccaccaggacagcccggaatctcaggtattgatnggccacaggaccaaaaa
ggaaacttgggtcctcaaggtgaaccaggaccccctgggcaacaaggaatcacaggtcca
caagggcttccaggtccacaaggcccaattggcgttcctggtgaaaaaggacccccgggc
aagcctggtcttgcaggacttgctggtgctgatggccctcccggtcacccaggcaaagaa
ggacagtcgggagagaaaggttccttggggcctccaggtcctcaaggcccaattgggtat
cccggcccccgtggcgtaaagggcgctgacggtgtccgcggtctcaaaggtggcaaaggc
gaaaagggtgaagatggtttccctggatttaaaggtgacatgggccttaaaggtgacaga
ggtgaagttggccctcttggtccacgaggagaagatggccctgaaggtcccaaaggccgt
tctggcccaacaggagacccaggtggggctggtcaagctggagaaaagggtaaacttggt
gttcccggattaccaggatatccaggacgacaaggtccaaagggctcaactgggttccct
ggatttccgggttccaatggagagaaaggcgcaaggggcttgcacggaaaacctggccca
aggggacagcgaggaccaactggaccacgtgggtcacgaggcccaagaggcccaactggg
aaacctggccccaagggcacggctggcagtgatggaccccctggcccaccaggtgaaagg
ggcccacaaggaccccaggggcctgttggatttcctggaccaaagggacctcctggtcca
ccagggaaggatggcttgcccggacacccagggcagaggggtgaaactggtttccaaggc
aagactggccccccgggtcctggtggcgtggttggacctcagggccccactggcgagact
ggcccaataggtgagagaggtcatcctggtcctccaggcccaccaggtgaacaaggtctt
ccaggcgctgctgggaaagaaggtgctaagggtgacccaggtcctcaaggcatctctgga
aaagatggacctccaggactccgtggtttcccaggtgaaagaggcctgccaggagctcag
ggtggagctggtctgaaaggaggagaaggtccacaaggtccaccgggtcccattggttca
cctggtgaacgtggtccggcaggtactgctggcccaattggtttgccgggacgtcctggt
ccccagggtcctcctgggccagcaggagaaaagggagctccgggtgaaaaaggtccccaa
ggcccagccggacgtgatggagtacaagggcctgtaggccttcctggccctgccggtcca
gctggttctcctggagaagatggtgacaagggtgaaattggagaaccaggtcagaaaggg
agcaaaggtgacaaaggagaaaatggtcctcctggaccaccaggtcttcaaggtcccgtc
ggcgctcctggtatagctggaggtgatggagaacctggtccaagaggacagcaagggatg
tttgggcaaaaaggcgatgaaggcccacgaggcttccctggtcctccaggtcccattggt
cttcagggtcttcctggcccaccaggggaaaaaggtgaaaatggggatgttggtccaatg
ggtcctcctggtccccctggcccaagaggcccgcagggtccaagtggagctgatggtcct
caaggtccaccaggatctgttggctctgttggaggtgttggtgacaagggcgaacccggg
gaagctggtaaccctggccctcctggagaagctggaacagggggtccaaaaggggaaagg
ggtgaaaagggtgaggctggaccaccaggggcagctggaccagcaggtattaaaggacct
ccaggtgatgacggacctaagggtaacccgggtcctgttggctttcctggtgaccctggt
ccccctggtgaacctgggcctgctgggactgatggcacaggaggggagaaaggtgaagat
ggtgacccaggccaacccggtccaccaggtccttcaggtgaagcaggaccccctggcccc
cctgggaagagaggacctccaggagcagctggtgccgaaggaaggcagggtgaaaaagga
gcaaagggggaacctggttcagaaggtgctccaggaaaaacaggcccagttggacctcaa
ggtccttcagggaaacctggtccagaaggtcttcggggtattcctggccccgtgggagaa
caaggtctacctggagcaccgggtcaagatggtcctccaggtcccatgggtcctcctggc
ttgcctggcttgaaaggagatccaggttccaagggtgaaaaggggcatcctggtttgatt
ggtctgatcggacctccaggagaacagggagaaaagggtgacaggggtctgccgggcccc
cagggagtcactggagcaaaaggagacggaggaattcctggttctgctggcccacttggt
cctcctggtccacctggcttacctggaccccaaggacccaaaggctctaaaggttcaaca
ggtcctggtggtcagaagggtgatggcggtttacctggaccccctggaccacctggccct
ccgggtgaggtgattcaacctttgccgatccagtcacccaaaaagaccagaagatcttca
gatgccatgatgtccgatgcagccgacagcatcctggattacaccgacggcatggaggag
atctttggctcacttaactctctgaagcaggacattgagcacatgaaatacccaatgggg
actcagaacaacccagcccgaacatgcaaggatctccagctctgtcacccagacttccca
gatggagagtattggattgatcctaaccagggctgttccggggactctttcaaagtatac
tgtaatttcacagcaggcggggaaacttgcatatatccagataagaagtcggaaggagta
aggatttcatcatggccaaaggagaatccaggaacctggtttagtgaatttaagagaggc
aagctgctttcctacgtggatgctgaaggcaattccattaatatggtccaaatgacattc
cttaaactactgagtgcctctgcccgacagaacttcacttataactgccatcagtcagtg
gcatggcatgacgtgtcttctgacagctatgacaaagcactgaggttcttaggctcaaac
gatgaagagatgtcttatgacaacaatccttacatcaaagttcttcacgatggctgtgcg
acacgaaaaggctatgcaaagactgttcttgaaattgatactcccaaaatcgaccaagtg
cctatttttgatgtgatgattaatgactttggtgatcagaatcagaagtttggatttgaa
attggccccgtctgtttccttggttaa
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integrated database retrieval system
