Podarcis muralis (common wall lizard): 114598794
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Entry
114598794 CDS
T06059
Symbol
COL24A1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(XXIV) chain
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
pmua
Podarcis muralis (common wall lizard)
Pathway
pmua04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pmua00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
114598794 (COL24A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pmua00536
]
114598794 (COL24A1)
Glycosaminoglycan binding proteins [BR:
pmua00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
114598794 (COL24A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
114598794
NCBI-ProteinID:
XP_028588722
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All DBs
Position
6:27238780..27406128
Genome browser
AA seq
1689 aa
AA seq
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MPLGAQRTRSGSISPTAKTKTLLLFFATCIAVGATQIQEEGIDILHHLGLSGQALHQPST
GTAQPLSRTSLPQGVHLSASGVVLSTNAAIEVPVSQVIASHIGSQFTLLVSLRSYAVNNA
FLFSVRNKNRLQFGVQLXPRKIMVHTGGKQSVYFDYTVHDEQWHTFAIDVTEKAVSLYTQ
CGRKHFSRETISKVQPLDSQSLFTLGRMNSHSVNFEGIICQLDIIPSAQALANYCKYVKQ
QCRQADTYRSQTIPPDTSLGVPPSKQLDEETQPVSMPLSTRKGESNLRRSNGASVHMPPE
PLETTSPLTPRLLENGTALEIIPEPDDQGIVKASKIPQQDASKKKDGFQALTKLPPNLTD
NATGDTSRKTYPDLLFSIKQTKTKTGTSKQYPYEPVELQQVLNTTSYRASDSTPFDNQLG
SRDEGTFPIDDIYNAETSYELDIDGYDYDYEELERMFELENLRGPKGDPGPPGPQGSPGL
PGPAGKRGPRGIPGPHGNPGLPGLPGPKGPKGDPGFSPGQAKRGEKGDTGLIGLPGLVGI
KGEKGPMGYPGPPGPLGEQGILGMAGNPGAPGYPGRQGLAGPEGNPGPKGVRGFIGPPGV
AGLPGPEGERGIPGLPGKRGPKGRQGLPGDIGNRGPPGPDGSPGIVGGIGPPGFPGLRGV
VGPAGPSGAPGIPGPLGLPGSMGQPGLKGDKGEQGISGEMGELGYPGDKGAAGLPGPPGI
RGKPGPPGKTGDPGPRGPLGPPGPEGFPGDIGVPGLNGPEGPKGFLGDRGPPGPPGPKGV
EGEEGPAGPIGGAGPRGKPGRKGYAGEPGPEGLKGETGDQGIIGKTGETGPIGLPGETGS
SGGPGEKGERGSPGPMGPPGEKGIMGYPGPPGGSGGIGPQGLPGPPGARGPPGLQGPKGQ
RGPRGQDGPLGEQGTQGIKGESGDTGKKGIPGLIGKAGNPGERGSPGTAGLPGPPGNTGD
SGPMGEPGPRGQQGDAGPVGEPGFEGPPGPEGDPGPQGEPGTKGDAGPVGNAGESGEQGL
RGVPGPPGEDGVQGKDGPKGSVGDRGLPGEDGEKGETGIPGIPGPSGAPGIRGIPGPEGA
PGTLGQRGRPGKKGAKGQHGPPGEIGATGDRGQPGEIGPKGSRGTRGPMGHLGSMGSAGE
PGIPGYGGHQGQPGAPGPPGAKGEKGYPGEDSTVLGPPGPIGEPGPIGERGERGEPGDFG
YKGHMGLPGLRGAVGQQGPPGEPGERGEPGLKGEKGSQGPAGKKGMSGQAGKPGMSGIPG
PLGQKGVQGYPGPEGVPGNPGKAGLPGQQGLPGNRGSVGLAGLAGYPGTQGPKGLPGMPG
NTGPPGLKGEQGLRGHPGKQGKRGHAGTQGDQGPPGEPGLKGHAGQSGDHGLMGFQGFPG
PKGPEGDLGLIGILGPKGPVGQIGNIGPVGNEGIIGPAGKPGPRGEKGSRGEMGPQGSRG
HPGPPGPPGPPGPRKQIDISVAIQALIDSNTALQMESYQNTEVTLLDHSAEIFKTLHYLS
NLLHSIKNPLGTRDNPARICRDLLNCERKVSDGKYWIDPNIGCPSDAIEVFCNFSAGGQT
CLSPVSVTKLEFGTGKVQMNFLHLLSSEAIHTITVHCLNTPVWGTNDLRAQRPSVSFKGW
NGQMFEANAPLEPKVLLDECMIQDGSWHKTQFLFHTQDTTQLPVVQVQKFPHLKQGQQRY
IESGPVCFL
NT seq
5070 nt
NT seq
+upstream
nt +downstream
nt
atgcctttaggagctcaaaggacaaggagtggaagcatctctcccaccgcgaaaacgaaa
accctcctccttttttttgcaacatgtatagctgtgggtgctacacaaatacaagaagaa
ggcatagatattcttcatcatttaggcctaagtgggcaagctcttcatcaaccatcaaca
gggactgcacagcctttgtcacgtacttcattacctcagggggttcacctaagtgcctca
ggagttgttttgtccacaaatgcagccattgaggtgcctgtctctcaagtgatagcatca
cacataggctcccagttcacccttttggttagcttacgttcttacgcagtaaacaatgcc
tttcttttcagtgttagaaataaaaatagactgcagtttggtgtccagttgnctccaagg
aagataatggtgcatactggagggaagcagtctgtatattttgattacactgttcatgat
gagcagtggcacacatttgctattgacgttacggaaaaagccgtgtccctgtatactcaa
tgtggaagaaagcacttcagcagggagactatttctaaagtacagccgttggattcgcag
agtttgtttactttaggaaggatgaactcccattcagtcaactttgaaggaataatttgt
cagctggacattatcccctctgcacaagccttggcaaactattgtaaatatgtgaaacaa
cagtgtcgtcaagctgacacataccggtctcaaacgattcctccagacacatcccttggg
gtgccaccaagcaaacagttggatgaagaaacccaaccagtttccatgccattgagtaca
aggaaaggagaatcaaaccttcgtcgcagcaatggtgcatcagtccacatgccaccagaa
cccctagagacaacctctcccctgacacctcgtttattagaaaatggtactgcattggaa
attataccggaaccagatgaccagggaattgtgaaagcatcaaaaattcctcagcaagat
gccagcaaaaagaaagatggcttccaggctctcacaaaattgcctccaaaccttacagat
aatgccacgggtgatacaagcaggaaaacctaccccgatctgctgttttccataaagcag
actaaaaccaaaactggcacatcaaagcagtatccatatgaacccgtggagctgcagcaa
gttttaaacacaacatcatatagagcttctgattccacacctttcgataaccagcttggt
tcaagggacgaagggacatttccgattgatgacatttacaacgcagaaaccagttatgaa
cttgatattgacggttacgattacgactatgaagaattggaaaggatgtttgaactcgag
aatctgagagggcctaaaggagaccccgggccgccgggaccccaaggttctccagggtta
cctggtccagcagggaaaagaggtccaaggggtattccaggtccacacgggaacccaggg
ctaccggggctgcccggtcccaagggtcccaaaggtgatccaggattctccccaggacaa
gcaaaacgtggggaaaagggcgatacaggactaataggcttgccaggccttgtaggcatc
aaaggtgaaaagggtcccatggggtatccaggaccaccggggccacttggggagcaagga
attctaggaatggctggcaaccctggggctccaggttaccctggcaggcagggtttagca
ggaccagaaggtaacccaggccctaaaggtgtaagaggtttcattggcccacctggtgtg
gcaggactgcctggacccgagggagaaagaggcattcctggtttacctggaaaaagaggt
cctaaagggagacagggattaccaggtgatattggaaatagaggcccccctggtcctgat
ggaagtcctggaattgttggtggtattggtcctcctggatttcctggacttcgaggtgtt
gtaggaccagccggaccatctggcgcacctgggattcctggacctctgggtcttccgggg
agtatggggcaacctggattgaaaggtgataagggcgaacaaggcatttcaggagagatg
ggggagctgggatacccaggagacaagggtgcagctggtttgccggggccaccaggaatc
agaggaaaaccaggacccccgggtaaaacaggagatccaggaccccggggaccactggga
cctcctggacctgagggttttccaggggatattggtgttcctggtttgaatggccctgaa
ggcccaaagggatttctaggtgacagaggacctccaggaccaccaggccccaaaggtgtt
gagggagaagaaggacctgctggacctattgggggagctggaccaaggggaaagcctggt
cgaaaaggttatgcaggtgaaccgggaccagaaggcctgaagggagaaacaggagatcaa
ggaattattgggaaaactggtgaaacaggtcccatcggcttacctggtgaaactggatca
tccggaggacccggcgagaagggagagagggggagtccgggcccaatgggccctcctggg
gaaaaaggtatcatgggatatccaggtcctccaggtggctctgggggtatagggccacaa
ggattgcctggtcctccaggggcaagaggacctcctggactacagggccccaaaggtcaa
agaggaccaagaggccaggatggtcctctgggagagcaagggacacaaggtattaaggga
gagagtggtgacacagggaagaaaggcatccctggactcattggcaaagctggaaaccct
ggagaaagaggtagcccaggaacagcaggtttgcctggtcctccaggaaacacaggagac
agtggtcctatgggtgaaccaggaccaaggggacaacaaggtgatgctggtcctgtagga
gaaccaggctttgaaggaccacctggcccagagggggacccagggccacaaggagaacca
ggcacaaagggagatgctggacctgttggcaatgctggagaatcaggagaacaaggttta
agaggtgtaccaggaccaccgggggaagatggtgtccaagggaaagatggaccaaagggc
agtgtaggagaccgagggcttcctggagaagatggtgaaaaaggagagaccggaatccca
ggaatcccaggcccttcaggtgcacccggcataaggggtattccagggcccgaaggagct
ccaggaactctaggtcaaaggggccgcccaggaaaaaagggggcaaagggacagcatggc
cccccaggagagattggtgccacaggtgaccgcgggcagcctggagaaattggtccaaag
ggttcaagaggaactagaggcccaatgggacatttagggtcaatgggatctgcaggagag
ccaggaattccaggttacgggggtcaccagggtcagccaggcgctcctggcccaccagga
gccaaaggagagaagggttacccgggggaagacagcacagtgctgggaccacctgggccc
ataggtgaaccaggccctattggtgaacgtggagagagaggagagcctggtgattttggt
tacaagggtcacatggggcttccaggacttagaggtgctgttggacaacaagggccacca
ggtgagccaggtgaacgtggtgaaccaggactaaaaggagagaaaggatctcaaggtccc
gctgggaaaaaaggaatgagtggtcaagctgggaaacctgggatgtctggtatacctggt
cctttgggtcagaagggtgtacaaggctatcctggaccagagggcgttcctgggaatcct
ggaaaggctggcttacctggacaacagggccttcctggtaacagaggaagcgtgggacta
gctggactggcaggatatcctggaactcagggaccaaaggggttaccaggtatgccagga
aacactggaccaccaggactaaagggtgaacaagggcttcggggtcacccaggaaagcaa
ggtaaaagaggtcatgctgggacccaaggcgatcaaggccccccgggagaacctggcctc
aagggtcatgctggacaatctggagatcatggtttgatgggatttcagggattcccaggt
cccaagggtcccgaaggtgaccttggtttaattggaattttgggacctaaaggcccggta
ggacaaataggaaacattggccctgttggtaatgaaggcatcataggtccagcaggcaaa
cctggacccaggggtgaaaagggatccagaggcgaaatgggacctcaaggatcacgaggc
catccaggtccacctggtccaccagggccacctggtccaagaaagcagattgacatcagt
gttgctattcaagccttgattgattccaatactgcgttacagatggagagctaccaaaac
actgaagtaacattactggatcacagtgccgagatattcaaaacattacattaccttagc
aatttactgcacagtattaaaaaccctctgggaactcgagataacccagcacgtatttgc
agggatttgcttaactgtgaacgtaaggtgtctgatggaaaatactggattgatccgaat
attggatgtccttctgatgccattgaggttttctgcaacttcagcgctggtggccagaca
tgcttatcacctgtctctgtaactaagttggagtttggcactggaaaagtgcagatgaac
ttccttcatttactgagttcagaagcaatccataccatcacagtccactgtctaaacacc
ccggtgtggggaaccaatgacctacgtgctcagaggccctctgtcagcttcaaaggatgg
aatggccaaatgtttgaagcaaatgcgccgcttgaaccaaaagtgcttctagatgaatgc
atgattcaagatggcagctggcataaaacccagttcctttttcacactcaagacaccact
cagcttccagttgttcaagtgcagaaatttcctcatctcaaacaaggacaacagcgttac
atagaaagtggcccggtgtgttttctctag
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