Podarcis muralis (common wall lizard): 114607256
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Entry
114607256 CDS
T06059
Symbol
COL3A1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(III) chain
KO
K19720
collagen type III alpha
Organism
pmua
Podarcis muralis (common wall lizard)
Pathway
pmua04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pmua00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
114607256 (COL3A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pmua00536
]
114607256 (COL3A1)
Glycosaminoglycan binding proteins [BR:
pmua00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
114607256 (COL3A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
114607256
NCBI-ProteinID:
XP_028606117
LinkDB
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Position
1:122563465..122657792
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AA seq
1458 aa
AA seq
DB search
MMSCVQGAVLLFLAVLQPSVILAQQDVVGACTHLGQVYADRDVWKPEPCQICVCDSGAVL
CDDIVCDEEMELECENPEIPFGECCAKCPSPTMPPGPDMNVPGGPQGPRGDPGPPGTPGI
NGSPGPPGQPGTPGTPGQPGVCPSCPGLGTGSNFSPQYEGDYTKSGGGGYGQLGAPGSPG
APGLPGPVGQPGPPGPHGYQGPPGEPGQAGSPGPAGPPGNMGPPGPAGKDGESGRPGRTG
ERGLPGTPGHKGPPGMPGMPGMKGHRGFDGRDGAKGDAGAPGLKGENGLPGENGSPGPMG
PRGQPGERGRPGAPGSAGGRGNDGSPGAAGQPGPPGPPGPSGFPGSPGFKGETGPVGPPG
SSGSPGARGEPGPQGQPGGPGPAGPGGRDGSPGAKGPPGPAGMAGAPGLSGGRGPPGPPG
TNGIPGQRGPAGEPGKNGGKGEPGPRGERGENGTPGAAGPPGEEGKAGGPGQPGTNGIPG
SPGERGAPGFRGPPGSNGLPGEKGGPGERGSPGPAGQRGVQGEPGRDGSPGLPGMRGLTG
SPGSPGQDGKPGPSGSPGESGRSGPPGPAGPRGQPGVMGFPGPKGSEGSPGKNGERGSPG
PPGGLGQPGKDGDAGAQGPPGPSGPSGERGEPGATGPPGFQGLPGPPGGPGENGKPGEAG
PRGENGAPGLPGTKGENGIPGERGAQGPQGPPGSRGGAGPPGPEGAKGPGGPPGPPGGPG
LQGLQGMPGDRGANGNPGPKGDKGEPGSRGGDGLPGKDGVRGPVGSIGPPXPAGQPGDKG
EPGTAGPHGPTGPRGGPGDRGEQGPPGPAGFPGAPGQNGEPGGKGEKGPSGERGEAGPPG
AAGPSGGPGAPGPAGPPGGKGERGSPGPVGQAGFPGTRGLPGPPGNSGNPGLPGNAGPPG
KDGPPGPAGSTGPAGGPGAAGPKGEPGPPGEKGPAGVKGEPGFPGPSGLGGIPGQRGSVG
LPGPRGPSGANGAPGGKGEDGKPGSNGSPGERGPQGPPGPMGLNGAPGEPGRDGNPGSDG
LPGRDGSSGPKGDRGENGSPGLPGAPGHVGPPGNTGPAGKSGERGHPGPAGPVGPTGPAG
ARGAPGPAGARGDKGEAGERGSNGMKGHRGFPGNPGPPGPSGALGPQGPSGSPGPAGARG
PPGPNGPPGKDGTSGYPGPIGPPGPRGSRGESGAPGPAGHGGPPGPPGQPGAPGPCCGGG
GPENLEKGPSYYRDQPDEDKIAMSDILTSLKSINNQIENIVSPDGSRKNPARNCRDLKFC
HPELKSGEYWIDPNQGCKLDAIKVYCNMETGETCISANPMSVPKKNWWTSPGPEKKHIWF
GESMNGGFQFSYGDPDLPEEVADVQLAFLRILSSRASQNITYHCKNSIAYMDEASGNVKR
ALKMMSSTDSEIKAEGNSKFTYTVLEDGCTKHTDEWGRTVFEYRTRKTMRLPVIDIAPFD
IGAPNQEFGVDIGPVCFL
NT seq
4377 nt
NT seq
+upstream
nt +downstream
nt
atgatgagctgtgtgcagggagccgttttgcttttccttgctgtgttgcaaccctcagtt
attttggcacaacaagatgtcgtaggagcatgtacacaccttggccaagtgtacgctgac
agggatgtttggaaaccagaaccatgccaaatctgcgtgtgtgactcaggagctgttctg
tgtgatgacatcgtctgtgatgaagaaatggaattagaatgcgagaatccagagattccg
tttggagaatgctgcgcaaagtgcccttcaccaacgatgccacctggccctgatatgaac
gttccaggtggtcctcaaggccccaggggagatcctggtccacctggtactcctgggata
aatggttcacctggtccacctggccagccaggaacacctggcacacctggccaacctgga
gtctgcccaagttgccccggtctcggtacaggatcgaacttttctcctcagtatgaaggc
gattataccaagtctggtggaggaggatacggccaacttggtgcacctggatctcctggc
gcacctggcctccctggtcctgttggtcagcctggtccacctggaccccacggataccaa
ggccctcctggtgaacctgggcaagctggttctccgggtcctgctggtccacctggaaat
atgggtccacctggccctgccgggaaagatggagaatctggaagacctggcagaaccggc
gaacgtggattacctggtactcctggtcacaaaggtccccctggcatgcctggcatgcct
ggaatgaaaggtcaccgaggatttgatggaagagatggtgccaaaggtgatgcaggtgct
cctggtctgaagggtgagaacggtcttcctggagaaaatggatcccctggaccaatgggt
ccaagaggtcagcctggcgagagaggaagaccgggagctccaggaagtgctggcggtcgt
ggtaatgatggctctcctggagcagctggccaacccggtcccccaggccctcctggacct
tcaggatttccaggttctccaggttttaagggtgaaactggccctgttggcccccctggc
tctagtgggtctcctggagcaagaggagagcctggtcctcaaggacagcctggtggtcct
ggtcctgctggtcctggaggtagagatggaagtcctggtgcaaaaggtcccccaggtcct
gctggcatggctggtgctcctggactgagcggaggccgtggtcctcctggccccccgggt
accaatggaatccctggacaaagaggtccagctggtgaacctggtaagaatggcggaaaa
ggagaaccgggaccaagaggtgaacgaggtgaaaatggtactcccggcgctgctggtcct
ccaggagaagaaggcaaggcagggggtcctggtcaacctggcacaaatggtatacctgga
agtccaggagaacgcggtgccccaggttttcgcggccctcctggcagtaatggacttcca
ggtgaaaagggtgggcccggtgaacgaggctctcctggtcctgcaggacaaagaggcgtt
cagggtgaaccaggacgtgatggtagcccaggtcttccaggaatgagaggtttaacagga
agcccaggaagcccaggacaggatggaaaaccaggtccttctgggtccccgggagaatca
gggcgaagtggtcccccaggaccagcaggtccacgaggtcaaccaggcgtgatgggtttt
cctggtcccaaaggtagcgagggttcaccaggtaaaaatggagagagaggttcacctgga
cctcctggcggactgggacaaccaggaaaggatggtgacgcaggagcacaaggccctcca
ggaccttctggtccttctggggaaagaggggagccaggagcaacaggaccacctggattc
cagggactccctggtcctcccggcggacccggagagaatggaaagcctggagaagctggt
ccaagaggtgaaaatggagctccaggactcccaggaaccaagggtgaaaatggcatccca
ggagaacgaggtgcacaaggacctcagggtcccccaggaagtagaggtggagctggccct
cctggaccagaaggtgcaaagggcccaggtggtcctccaggtcctcctggaggtcccgga
ctacaaggtttacaaggaatgcctggagatagaggagccaatggaaaccctggacctaaa
ggggacaagggagagcctggtagcagaggtggagatggcttacctggtaaagatggtgtc
cgaggtcctgtcggttccattggacccccgngtccagcaggccaaccaggagacaaggga
gagcctggtacagctggacctcatggcccaacaggtccccgtggtggtcccggtgatcga
ggagagcaaggacctcctggcccagctggcttccctggagctcctggacaaaatggagaa
cctggtggaaaaggagagaaaggcccttctggtgagcgtggtgaagctggaccccccggt
gctgctggtccatcaggaggccctggagcacccggtccagccggtcccccaggaggaaaa
ggagagcgaggttcgccaggcccagtaggtcaggctggctttcctggtactcgtggctta
cctggccctccaggcaacagtggtaacccaggacttcctggcaatgcgggtcccccaggc
aaggatggtcctcctggcccagctggttctactggtcctgctggtggcccaggagctgct
ggtcccaaaggtgagcctggcccaccaggtgaaaaaggtccggcaggtgtaaaaggagaa
ccaggttttccaggtccttcaggtttgggtggcatacctgggcaacgtggttctgtaggg
ttgcccggcccgagaggtccatctggtgccaatggtgcccctggcggaaagggtgaagat
ggcaaaccaggatccaatggtagcccaggagaacgaggacctcaaggtccaccaggccca
atggggctcaatggagcacccggagaaccaggcagagacggtaaccctggatcagacggt
ttaccaggtcgtgatgggtcttcaggaccaaagggtgatcgtggtgaaaatggttctcct
ggtttgccaggggctccgggtcatgtgggtcccccaggtaatactggtccagctgggaaa
tcaggcgagagaggacatccaggacctgctggtccagtcggccccactggccctgccggt
gcccgtggtgctcccggccctgcgggtgcacgtggtgacaaaggtgaagccggtgaacgt
ggcagcaatgggatgaagggtcaccgaggattccctggtaaccccggaccccctggtcca
agtggtgcattgggtccccaaggtccaagtggaagcccaggacctgctggtgcaagaggt
ccccctggtccaaatggcccacctggaaaagatggtacaagtggctacccaggtcccatt
gggcctccaggtcctcgtggaagcagaggcgaatctggtgctccgggtcctgcgggtcat
gggggtcctccagggcctcctggtcaacctggagctcctggtccatgctgcggaggtggt
ggcccagagaaccttgaaaaaggaccatcctactacagagaccagccagatgaggacaaa
atagccatgagcgatattttaacttcgctgaagtcaatcaacaaccaaatcgaaaacatt
gttagccccgatggctcacggaagaacccagctcggaattgcagagatctgaagttctgc
catcctgaacttaagagcggggaatactggatcgatcccaaccaaggttgcaaattggac
gccattaaagtatactgcaatatggaaactggggagacgtgcatcagtgctaatcctatg
agtgttccaaagaagaactggtggacaagcccaggacctgaaaagaaacatatttggttt
ggagagtctatgaatggaggcttccagttcagctacggagacccagatcttccagaagaa
gttgcagacgttcagctggccttccttagaattctttctagccgagcgtctcagaatatc
acctatcactgcaaaaacagtatagcttacatggacgaggccagcgggaatgtgaagaga
gccctgaagatgatgagttctactgacagcgaaatcaaggcagaaggaaacagcaagttc
acatacaccgtcctggaagatggctgtactaaacacactgatgaatggggccgaaccgtc
tttgaatacagaacacgcaagacaatgcggttgccggtgatagatatcgcacccttcgat
atcggcgctcccaatcaagaatttggtgtggacattggcccggtttgcttcttataa
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