Podarcis muralis (common wall lizard): 114608017
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Entry
114608017 CDS
T06059
Symbol
SF3B1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
pmua
Podarcis muralis (common wall lizard)
Pathway
pmua03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmua00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114608017 (SF3B1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pmua03041
]
114608017 (SF3B1)
03036 Chromosome and associated proteins [BR:
pmua03036
]
114608017 (SF3B1)
Spliceosome [BR:
pmua03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
114608017 (SF3B1)
Complex B
114608017 (SF3B1)
Complex C
U2 SnRNP specific factors
114608017 (SF3B1)
Chromosome and associated proteins [BR:
pmua03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
114608017 (SF3B1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
HEAT_EZ
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
TALPID3
Motif
Other DBs
NCBI-GeneID:
114608017
NCBI-ProteinID:
XP_028607619
LinkDB
All DBs
Position
1:128849402..128874940
Genome browser
AA seq
1302 aa
AA seq
DB search
MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
TELEDDDDDYSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPQKIADREDEYKN
RRRMMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGEL
KVVNGAASQPPSKRKRRWDQTADQTPGTTPKKLSNWDQAETPGHTPSLRWDETPGRAKGS
ETPGATPGSKIWDPTPSHTPAGAATPGRGDTPGHATPGHGGATSSARKNRWDETPKTERD
TPGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPIGT
PAMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYRVLPPPAGYV
PIRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLVDV
DESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSP
TLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAK
AAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARH
TGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYGIE
SFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSPDE
EMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVELAN
KVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAFQE
QTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVVM
KTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTP
ILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNTFG
YIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELN
VQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVYGF
GCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARKVR
DVYWKIYNSIYIGSQDALIAHYPRIYNDEKNTYIRYELDYVL
NT seq
3909 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaagactcacgaagatattgaagcacagattcgagaaatccaaggc
aaaaaagctgcccttgatgaagctcagggagtaggccttgattctacaggatattatgac
caggagatctacggcgggagtgatagcagattcgctggatatgtaacttcaatcgcagca
actgagctagaagacgatgacgacgactactcttctacaagcttgcttggccagaagaaa
cctggataccatgcaccagtggcactccttaatgacataccacagtcaaccgaacagtat
gatccgtttgctgagcatcgcccacaaaagatcgctgatcgggaagatgaatacaaaaac
cgcaggcggatgatgattatttcccctgagcgtcttgatccttttgcagatggagggaag
acacctgaccctaaaatgaatgcgagaacatatatggatgttatgcgtgaacaacatttg
acaaaagaagagagggaaattaggcagcaactagcagaaaaggctaaggccggcgaactt
aaagtcgtcaatggtgctgcgtcccagccaccatcaaaacgcaaacggcgttgggatcag
actgctgaccagactcctggtaccacaccgaagaaattatccaactgggatcaagccgag
acccctggacatactccgtctttgcgatgggatgaaacacctggccgtgcaaagggtagt
gagacacctggagcaacacctggatctaaaatatgggatccaactcctagccatacacca
gctggagctgcaacacctgggcgtggggatactcctgggcatgcaacaccaggccatgga
ggtgcaacttccagcgcacggaaaaatcgatgggatgagactcccaaaacagaaagagat
actcctggacatgggagtggttgggctgaaacacctcgtactgatcgaggtggcgattcc
attggcgaaaccccaacccctggggcaagcaaaagaaaatcacgttgggatgaaacgcct
gcaagccagatgggagggagcacccctgtgttgacacccggcaaaacaccaattggtaca
ccagctatgaacatggcgacccccacaccaggtcacatcatgagcatgactcctgaacag
ctccaagcttggcgttgggaaagagaaatagatgagagaaataggcccctttctgatgaa
gaactggatgccatgtttcctgagggatacagggttctccctcctccagcgggttatgtc
cctatccgtactccagctcgtaaacttacagcgacgccaacacctctgggcggcatgact
ggattccacatgcaaactgaagacaggaccatgaaaagtgtcaatgaccagccttcagga
aatcttcctttcctaaaaccagatgacatacagtatttcgataaactactggttgatgtt
gacgaatcaacactcagtccagaggaacagaaagaaagaaaaataatgaaattgcttttg
aagattaagaatggcacccctcccatgaggaaggctgctttgcgacagattactgataaa
gctcgtgaatttggggcaggcccgctgttcaatcagattttacccttgctgatgtcacca
actcttgaagaccaagaacgccatttgcttgtcaaagttattgacagaatcttgtacaaa
ttagatgacctggtccgaccatatgtccacaagattcttgtggtcattgaaccgttgctg
attgatgaagactactatgccagggtagaaggcagagaaattatttccaacttggctaag
gctgccggactggcaacaatgatttccactatgcgacctgatatcgataacatggatgaa
tacgttcgtaacacaacggctcgagcctttgctgtggtcgcctccgctttgggcattcca
tctctcttgccttttttaaaagccgtgtgtaaaagcaaaaagtcctggcaagctaggcac
actggtatcaagattgtgcagcaaattgctattcttatgggctgtgccattttacctcat
ctcaggagtttggttgaaattattgagcatggcttggtggatgagcagcagaaagtacgt
accatcagtgctttggctattgctgctttagccgaggcagcaactccctatggtatagag
tcatttgactctgttttaaagcccctgtggaagggtatacgccagcacagaggaaagggt
ctggctgccttcttgaaagctatcgggtaccttattccacttatggatgcagaatacgcc
aattactataccagggaagtaatgttgatccttatcagagagttccagtctcctgatgaa
gaaatgaaaaagattgtgctgaaggtagtaaagcagtgctgtggaacggatggtgttgaa
gcaaactacattaagacagagattctgcccccatttttcaagcacttttggcagcacaga
atggcactggacagaaggaattacagacagttggttgacacaactgtggagcttgcaaac
aaagttggagcagcggaaattatttccaggattgtggatgatctgaaagatgaagctgag
cagtacaggaagatggttatggagacgattgagaaaatcatggggaatctgggagccgct
gatattgaccacaagctggaagaacagcttattgatggtatcctgtatgccttccaagaa
cagaccacagaggactccgtgatgttgaacggatttggaacagtggtgaatgctctcggc
aagagagttaaaccatacttgccccagatctgcggtacggttttgtggcgtttgaacaac
aagtcggccaaagtaaggcagcaagctgctgacctgatatcccgtactgcagttgtcatg
aagacttgtcaggaggaaaaattgatgggacacttgggtgtggtattatatgagtacctg
ggtgaagaataccctgaagtgttgggcagtatcctcggagcacttaaagctattgtgaac
gtcataggtatgcacaaaatgacccctccgattaaagacttgctgccaaggctcacacct
atcttgaagaacagacatgaaaaagtgcaggagaattgtattgacctggttgggcgtatt
gcagacaggggggcagaatatgtttctgcaagagagtggatgagaatctgctttgaactg
ctggagttgctaaaagctcacaagaaagccatccgaagagcaactgtgaacacatttggt
tatattgcaaaggctattggaccacacgatgtgctggcgacgctgctaaataatttgaaa
gtccaagaaagacaaaacagagtgtgtacaacagtagcaatagctattgtagctgaaacc
tgctcccctttcacagtgcttcctgcgctcatgaatgaatacagagttccagaactgaat
gtccagaatggtgtattaaaatcactttccttcctctttgagtatattggagaaatggga
aaggactacatttatgctgtaaccccattgcttgaagatgctttaatggacagggacctt
gttcacagacaaaccgctagtgctgtagtacagcatatgtcgcttggagtatacggcttt
ggctgcgaagactctttgaatcacttactgaattacgtgtggcccaatgtgtttgagaca
tcgccccatgtcatccaagcagttatgggagcgctggaaggactgagggttgctattgga
ccttgccgaatgttacaatattgtttacagggtttgtttcaccctgccagaaaagtcaga
gacgtgtactggaagatctacaattccatctacattggttcacaggatgctttaatagca
cattacccaagaatctacaatgacgaaaagaacacctacattcgttatgaactcgattat
gtcttgtaa
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