Pseudomonas muyukensis: KSS95_15105
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Entry
KSS95_15105 CDS
T07704
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pmuy
Pseudomonas muyukensis
Pathway
pmuy03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pmuy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
KSS95_15105 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmuy03400
]
KSS95_15105 (ligD)
Enzymes [BR:
pmuy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
KSS95_15105 (ligD)
DNA repair and recombination proteins [BR:
pmuy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
KSS95_15105 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QXH33505
LinkDB
All DBs
Position
complement(3378631..3381096)
Genome browser
AA seq
821 aa
AA seq
DB search
MAKPLQEYQRKRDFNATPEPAAKRNRARRAHALQYCIQKHAASHLHYDFRLELDGTLKSW
AIPKGPSLDPKVRRLAVHVEDHPLDYADFEGHIPEGHYGAGDVIVWDRGIWEPEGDPREA
YAKGKLRFRLQGEKLSGVWNLFRTHLAGKKEQWMLVKANDPQARNEADYRIVDALPDSVL
SERTLLPRRAAKQAPKRLGMAQAQALPERLQPQLATLVDSPPGGDWCYEVKFDGYRIMAQ
IAAGKVRLFTRNGHDWSAKMPQQVAALQALGLDSAWLDGEMVVVDGNGVADFQALQNAFD
TEHDEPITYYLFDLPYLGGRDLRSLPVQDRRWALERLLEHNASERLKFSEAFEQPVDSLL
DSACRLGLEGLIGKRLGSPYSGRRSSDWIKLKCKQRQEFVIVGFTEPKGSRTGFGALLLA
LHDPDGGQLRYAGKVGTGFSATTLDTLHARLAPLEISQPALPKPPTGAEARGVHWLRPQL
LAEVAYAQMTREGIVRHSVFHGLRDDKPATAIDLERAMPAKQAAKAPLDALGTLRLTHPE
RVIDATCGATKRQVAAYYAQVADWLLPQLKHRPVALVRAPDGLGGELFFQKNAGQLPIPQ
VVSYTKAQAGQAAMVLNRADSLLGAVQMNMLELHTWNATDKDFQRPDRFVLDLDPDPALP
WKAMLEATQLTLALLDELGLKVFLKTSGGKGMHLVVPLTRRAGWDEVKDFSHALVEHMAG
LFPDRLSAVSGPKNRVGRIFIDYLRNGKGATTVAAYSLRAREGLPVSVPIWRDELPLLKG
ANQWNIDNLRERLAEVDDPWAEMTTTRQSITQRMRKQLGLA
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcccctgcaggagtaccagcgcaagcgcgacttcaacgccaccccggagccg
gctgccaagcgcaaccgcgcgcgccgcgcccatgccctgcagtactgcatccagaagcac
gctgccagccacctgcactacgactttcgcctggagctcgacggcaccttgaaaagctgg
gccattcccaagggcccgtcactggaccccaaggtgcgtcggctggcggtgcacgtcgaa
gaccatccgctggactatgccgacttcgaaggccatatccccgagggccactacggcgcc
ggtgacgtgatcgtctgggaccggggcatctgggagcccgagggcgacccgcgcgaggcc
tatgccaagggcaagctgcgctttcgcctgcaaggcgagaagctctcgggggtgtggaac
ctgtttcgcactcatctggcgggcaagaaggagcagtggatgctggtcaaggccaacgac
ccgcaggcgcgcaacgaagctgactaccgcattgtcgacgccctgcccgacagcgtgctc
agtgaacgcaccctgttgccgcggcgcgccgccaagcaggcgcccaagcgcctcggcatg
gcgcaggcgcaggccctgcccgagcgtctgcaaccgcagttggccaccctggtggattcg
ccacccggcggtgactggtgctacgaggtcaagttcgatggctaccggatcatggcacag
atcgccgcaggcaaggtgcggttgttcacccgcaatggccatgactggagcgcgaagatg
ccgcagcaagtcgcggcgttgcaggcgctgggcctggactcggcgtggctggacggtgaa
atggtggtggtcgacggcaatggcgtggcggatttccaggccttgcagaacgccttcgac
accgaacatgacgaaccgatcacctactacctgttcgacttgccctacctgggcggccgg
gatcttcgctcattacccgtgcaagatcggcgctgggccctggagcgactgctcgagcac
aatgccagcgaacggctgaagttttccgaagccttcgagcagccggtcgactcgctgctc
gacagcgcctgtcgactaggcctggaggggctgatcggcaaacgcctgggcagcccctac
tcaggccggcgcagcagcgactggatcaagctcaagtgcaagcagcgccaggagttcgtg
atcgtcggcttcactgagcccaaaggcagccgtactgggtttggtgccctgttgctggcc
ttgcatgaccccgacggcgggcagttgcgttatgccggcaaggtgggcactggcttcagc
gccacgaccctggacaccctgcatgcgcgcttggcccccctggaaatcagccagccggcg
ttgcccaagccgccaaccggcgccgaagcccgtggcgtgcactggctcaggccgcaattg
ctggcagaagtggcctatgcgcaaatgacccgcgaaggcatcgtgcgccattcggtgttc
cacggcctgcgcgacgacaaacccgccaccgccatcgacctggagcgcgccatgccagcc
aagcaagccgccaaggcgccgctcgacgcgttgggcacactgcgcctgacccaccccgag
cgtgtcatcgacgccacctgcggcgccaccaagcggcaagtggctgcgtactatgcccag
gtggccgactggctgttgccgcagctcaagcacaggccggtggccttggtgcgggcgccg
gacggcctgggtggcgagctgttcttccagaaaaacgccgggcagctgcctattccccag
gttgtcagctacaccaaggcccaggccggccaggcggcgatggtgctcaaccgcgccgac
agcctgcttggcgcggtgcagatgaacatgctcgagctgcacacctggaatgccaccgac
aaggacttccagcgccccgaccgtttcgtcctggaccttgaccccgatcctgcgctgcca
tggaaggccatgctcgaggccacccagctgaccctggccttgctcgatgaactgggcctg
aaggtgtttctcaagaccagcggcggcaaaggcatgcacctggtggtgccactgacgcgc
cgtgccggctgggacgaagtgaaagacttcagccatgccctggtcgagcacatggccggc
ctgttccccgaccgcctcagcgcagtgtcggggccgaagaaccgggtggggcggatcttc
atcgactacctgcgcaacggcaaaggcgccaccaccgtcgccgcctactccctgcgcgcc
cgtgaggggctgccggtatcggtgccgatctggcgtgacgaactgcccctgctcaagggc
gccaaccagtggaacatcgacaatctgcgcgagcggttggctgaggtcgacgatccctgg
gccgagatgaccaccacccggcagtcgatcacccagcgcatgcgcaagcagcttggtctg
gcctga
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