Paenibacillus mucilaginosus K02: B2K_34865
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Entry
B2K_34865 CDS
T02041
Name
(GenBank) DNA polymerase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pmw
Paenibacillus mucilaginosus K02
Pathway
pmw03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pmw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
B2K_34865
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmw03400
]
B2K_34865
Enzymes [BR:
pmw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
B2K_34865
DNA repair and recombination proteins [BR:
pmw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
B2K_34865
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
AFH65828
UniProt:
I0BTY1
LinkDB
All DBs
Position
8203891..8204811
Genome browser
AA seq
306 aa
AA seq
DB search
MAAPVKPKSSSSKSAKGTIMVQGRELTITNPQKLLWPEKGITKAIYLEKLAQLAPYLLTY
CRGRYLTTIRFPDGWNEKSFYQKNVPEPTPDFVASAELEGIRYVHLDSLPTLLWLGNLAA
LEFHPSFHRIGSPLPAEWLIDIDPSLDPEPRIMEAAEIIGGILDGMNIRSVPKTSGATGV
QIYVPIPPEKGYTFEQLRKIGQFVANFAVQKHPQLFTVERLKKDRGTRIYIDYLQHWYGK
TLSAPYTPRAREAASVSTPLTWQEVAARPDPRDFHLLNIMERLQQKGDLIAQNPAQNLDP
ILSFLK
NT seq
921 nt
NT seq
+upstream
nt +downstream
nt
ttggccgcacctgttaagcccaaatcctcatcctccaaatcggccaagggcacgatcatg
gttcagggccgggagctgacgatcacgaatccgcagaagctgctctggcccgaaaaaggc
atcaccaaggccatctacctggagaagcttgcccagctggccccctacctgcttacttac
tgcaggggaaggtatctgacgacgatccgcttccccgacggctggaacgagaaatcgttc
tatcagaagaatgtccccgagccgacgccggacttcgtcgcttcggcggagctggagggc
atccggtacgtgcatctcgattccctgcccacgctgctctggctcgggaacctggctgcg
ctcgaattccacccgtcgttccaccgcatcggcagcccgctgcccgccgaatggctgatc
gacatcgacccgagccttgaccctgagccgcgcatcatggaggccgcggagatcatcggc
ggcattcttgacggcatgaacatccggtccgtcccgaagaccagcggcgccaccggcgtc
cagatctatgtgccgatcccgcccgagaagggctacacgttcgagcagctgcgcaagatc
ggccaattcgtcgcgaatttcgccgtgcagaagcacccccagctgttcacggtggagcgg
ctgaagaaggaccgcgggacccgcatctacatcgactacctgcagcactggtacggcaag
accctctccgccccttatacgccgcgggcccgggaggccgcctcggtctccacgccgctg
acctggcaggaggtggccgcccgtccggatccccgggactttcacctgctgaacatcatg
gagcggctgcagcagaagggcgatctgatcgcacagaaccccgcgcagaacctcgatccg
atcctgtcgttcctcaaataa
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