Polaromonas naphthalenivorans: Pnap_0984
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Entry
Pnap_0984 CDS
T00459
Name
(GenBank) DEAD_2 domain protein
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
pna
Polaromonas naphthalenivorans
Pathway
pna03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pna00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
Pnap_0984
09124 Replication and repair
03420 Nucleotide excision repair
Pnap_0984
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pna03021
]
Pnap_0984
03400 DNA repair and recombination proteins [BR:
pna03400
]
Pnap_0984
Enzymes [BR:
pna01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
Pnap_0984
Transcription machinery [BR:
pna03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
Pnap_0984
DNA repair and recombination proteins [BR:
pna03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
Pnap_0984
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
ResIII
Helicase_C
Motif
Other DBs
NCBI-ProteinID:
ABM36301
UniProt:
A1VKX3
LinkDB
All DBs
Position
complement(1034639..1036960)
Genome browser
AA seq
773 aa
AA seq
DB search
MSYVVAVRALCEFTAKQGDLDLRFTPSPSAQEGIAGHALVASRRSKSYQPELSLSGDYQE
LRVRGRADGYDPDKNQLEEVKTFRGDLAAMPDNHRQLHWAQVKIYGWLLCQKLELPEVRL
ALVYLDIGSHEETLLTERMSADALRDFFEAQCEKFLGWARQELAHRAARDAALQALAFPH
AAFRPGQRDLAEAVYRSAASGRSLMAQAPTGIGKTIGTVFALLKAAPRQELDKVFFLAAK
TPGRRLALDALALIQQSAPALPLRVVELVARDKACLHLDKACHGDSCPLAQGFYDRLPQA
RSAALADPRASRQGKEALREVALAHGVCPYYLSQDLVRWSDVVVGDYNYYFDVSALLHAL
TVGNQWRVSVLVDEAHNLVDRARKMYSAELDQAELAGVRHAAAPALRKPLDRLHRVWRDV
QKDPQHDPQAAYQVRPDPPDKFLLALQQATSAITDDIEAHPTRVDAALQRFYFDALHFSR
MAESFGGHSLFDITQDAAAGGPAHARGSRAWSRLCIRNVVPAPFLAPRFAAARSVALFSA
TLSPQNYYADLLGLPADTAWVDVQSPFMAEQLAVRVVSDISTRYQHRALSLQPIADLMAR
QYAEKPGNYLVFLSSYDYLEKLAECFRQRYPLIPMWEQTRRMDEAARDEFLARFTAQTQG
IGFAVLGGSFAEGIDLPGDRLIGAFIATLGLPQVNPVNEQIKLRMAENFGASQAYDYSYL
YPGVQKVVQAAGRVIRSNSDRGVIYLMDDRFARPEVRRLLPRWWRVGQIRVFK
NT seq
2322 nt
NT seq
+upstream
nt +downstream
nt
gtgagctatgtcgtcgccgtcagggccttgtgcgagttcaccgccaagcagggcgacctg
gacctgcgcttcacgccctcgccttcggcccaggaaggcatcgccggccatgcgctggtg
gcgtcgcgccgcagcaagagttaccagcccgaactcagcctgagcggcgactaccaggag
ctgcgggtgcgcggccgggccgatggctacgacccggacaagaaccagctcgaagaagtc
aagaccttccggggcgacctggcggccatgcccgacaaccaccggcaactgcactgggcg
caggtgaagatttacggctggctgctgtgccagaagctcgaactgcccgaggttcggctg
gcgctggtgtatcttgatatcggcagccatgaggaaacgctgctgaccgaacgcatgagc
gccgatgcgctcagggatttttttgaagcgcagtgcgaaaaattcctcggctgggcgcgg
caggaactggcccaccgcgcggcgcgcgatgcggcgctgcaggcgctggctttcccgcac
gccgccttccggcccggccagcgcgacctggccgaagccgtgtaccggtccgccgccagc
ggccgcagcctgatggcccaggcgccgaccggcatcggcaagaccatcggcacggtcttt
gcgctgctgaaggccgcgccccggcaggaactcgacaaggtgttttttctggcggccaag
accccgggccgccggctcgcgctcgatgcgctggcattgatccagcaaagcgcgccggcg
ctgcccctgcgcgtggtcgaactggtggcgcgcgacaaggcttgcctgcacctggacaag
gcctgccacggcgattcgtgcccgctggcccagggcttttatgaccgcctgccgcaggcg
cgcagtgccgcgctggcagacccacgggccagccggcagggcaaggaggcgctgcgcgag
gtggccctggcgcatggcgtgtgcccctactacctgagccaggacctggtgcgctggagc
gatgtggtggtcggcgactacaactattactttgacgtgagcgccctgctgcatgcgctg
acggtgggcaaccagtggcgcgtcagcgtgctggtcgatgaagcgcacaacctggtggac
cgggcgcgcaagatgtattcggccgaactcgaccaggccgaactggcgggggtgcggcac
gctgcggcgcccgcgctgcgaaagccgctcgaccgcctgcaccgcgtctggcgcgatgtg
cagaaagacccgcagcacgatccgcaggcggcttaccaggtgcggcccgatccgcccgac
aaattcctgctggcgctgcaacaggccaccagcgccatcaccgacgacatcgaggcgcat
ccgacgcgcgtggacgcggcgcttcagcgcttttatttcgatgcgctgcatttctcgcgc
atggccgagagctttggcggccattcgctgtttgacatcacgcaggatgccgctgcgggc
gggccggcccacgccaggggcagccgcgcttggtcccggctgtgcatccgcaatgtggtg
ccggcgccgttcctggcgccgcgctttgccgccgcccgctcggtggcgctgttttcagcc
acgctgagcccgcaaaactattacgccgacctgctcgggctgcccgccgacacggcctgg
gtcgatgtgcagtcgcccttcatggccgagcagctggcggtgcgggtggtcagcgacatc
tccacccgctaccagcaccgcgcgctgtcgctgcagcccatcgcggatctgatggcgcgg
caatacgctgaaaagccgggcaattacctggtgttcctgagcagctacgactacctggaa
aaactggcggaatgcttcaggcagcgttacccgctgatcccgatgtgggaacagacgcgg
cgcatggacgaggcggcgcgcgatgaattcctggcgcgcttcacggcgcaaacccagggc
atcggctttgccgtgctgggcggctcgtttgccgagggcatcgacctgcccggcgaccgg
ctgatcggcgccttcattgccacgctgggcctgccgcaggtcaacccggtcaatgagcaa
atcaagctacgcatggccgagaattttggggccagccaggcttatgactacagctacctg
tacccgggcgtgcaaaaagtggtccaggccgccggccgggtgatccgcagcaactcggat
cgcggcgtgatctacctgatggacgaccgctttgcccggccagaggtcaggcgcctgctg
ccacgctggtggcgggtcgggcagattcgcgttttcaagtga
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integrated database retrieval system
