Polaromonas naphthalenivorans: Pnap_2196
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Entry
Pnap_2196 CDS
T00459
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pna
Polaromonas naphthalenivorans
Pathway
pna03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pna00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pnap_2196
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pna03021
]
Pnap_2196
03019 Messenger RNA biogenesis [BR:
pna03019
]
Pnap_2196
Transcription machinery [BR:
pna03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Pnap_2196
Messenger RNA biogenesis [BR:
pna03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Pnap_2196
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
OB_RNB
NACHT
AAA
GpA_ATPase
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ABM37504
UniProt:
A1VPC6
LinkDB
All DBs
Position
2343636..2344898
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AA seq
420 aa
AA seq
DB search
MHLNELKALHVSEVLKQAEALEIENVGRMRKQELMFAIIKKRSKTGETIVADGVLEVLPD
GFGFLRAPDSSYTASTDDIYISPSQIRRFNLHTGDMIEGEVRTPKDGERYFALNKLDKIN
DGAPEDNKHKVMFENLTPLFPREQFKLERDIKAEENLTSRIIDIIAPIGKGQRALLVAPP
KSGKTVMMQNIAHAIVANYPEVVMMVLLVDERPEEVTEMQRSVRAEVISSTFDEPAARHV
HVAEMVIERAKRLVELGKDVVILLDSITRLARAYNNVLPSSGKVLSGGVDANALQRPKRF
FGAARKIEEGGSLTIIGTALIDTGSRMDEVIFEEFKGTGNCEIHLDRRLYEKRVFPAINL
NRSGTRKEELLLAPEILQKSRILRQFMYNMDEIESMELMLKNMKATKNNHEFFDMMRRGG
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgcacttaaacgaactcaaggcgctgcacgtgtctgaagtcctcaagcaggccgaagcc
cttgagatcgaaaacgtcggccgtatgcgcaagcaggagctgatgttcgccatcattaaa
aaacgctccaaaacgggcgaaaccatcgtcgccgatggtgtgctggaagtgctgcccgac
ggttttggtttcctgcgcgcgcccgattcgagctacaccgcttctaccgacgatatctac
atcagccccagccagatccgccgtttcaacctgcacaccggcgacatgatcgaaggcgaa
gtgcgcacgccgaaagatggcgagcgctactttgcgctgaacaagctcgacaagatcaat
gacggcgcgcccgaggacaacaagcacaaggtcatgttcgagaacctgacgccgctgttc
ccgcgcgagcagttcaagctggaacgcgacatcaaggccgaggaaaacctgaccagccgg
atcatcgacatcatcgcgcccatcggcaagggccagcgcgccctcttggtggcgccgccc
aagtccggcaagacggtgatgatgcagaacatcgcgcacgccatcgttgccaactatccc
gaagtggtcatgatggtgctgctagtcgatgaacgccccgaggaagtgaccgaaatgcag
cgcagcgtgcgcgccgaagtgatttcatcgaccttcgacgagcccgccgcgcgccacgtg
catgtggccgaaatggtgattgagcgcgccaagcgcctggtcgaactcggcaaggacgtg
gtgattctgctcgactccatcacccgcctagcccgagcctacaacaacgtgctgccctcg
tcaggcaaggtgctgagcggcggcgtcgatgccaacgcgctgcagcggcccaagcgcttt
tttggcgcggcccgcaagatcgaggaaggcggcagcctgaccatcatcggcaccgcgctg
atcgacaccggcagccgcatggacgaagtgatcttcgaggaattcaaaggcaccggcaat
tgcgaaatccacctggaccgccgcctgtacgaaaagcgcgtgtttccggccatcaatctc
aaccgcagcggcacccgcaaggaagagctgctgctggcacccgaaatcctgcagaaatcg
cggattttgcgtcagttcatgtacaacatggacgagatcgaatcgatggaactcatgctg
aaaaacatgaaggcgaccaagaacaaccacgagttcttcgacatgatgcgccgcggcggc
taa
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