Parastagonospora nodorum: SNOG_10525
Help
Entry
SNOG_10525 CDS
T01161
Name
(RefSeq) hypothetical protein
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
pno
Parastagonospora nodorum
Pathway
pno03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pno00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
SNOG_10525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pno03400
]
SNOG_10525
Enzymes [BR:
pno01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SNOG_10525
DNA repair and recombination proteins [BR:
pno03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
SNOG_10525
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_N
DNA_ligase_A_M
BRCT_2
DNA_ligase_A_C
RNA_ligase
LIG3_BRCT
BRCT
Motif
Other DBs
NCBI-GeneID:
5977701
NCBI-ProteinID:
XP_001800794
UniProt:
Q0UCI9
A0A7U2FG11
LinkDB
All DBs
Position
Unknown
AA seq
990 aa
AA seq
DB search
MAEDTEMPDAEAVRENTLMYGHDDELDEKFPTRPMNLHKSPPFHTLFTDLFDPLMETQKK
GRQPPGPRRKAGPHGHSNLSPHEAKRNIIERFIASWRKTVGNDFYPAMRLIIPDKDRDRA
MYGLKEKAIAKVLIKLTKISKDSDDAKQMLNWKLPGQLHKASASTAGDFAGRCYQVLSSR
QLNTKLGDMSIAEVNNALDKLSQLGSEDEQVKIFQRFNRRMNAEEMTWLIRIILRQMKIG
ATEKTFLDIWHPDAETLFNISSNLRRVCWELYDPKVRLEGEDTGLSLMQCFQPQLAAFQD
KGGSFEKIVARLQANSDDDSFWIEEKLDGERMQLHMIEDPEAPGGKLFGFWSRKAKDYAY
LYGKHLQGDEAGALTRFITDAFGKNVRNIILDGEMITWDMDVDHIVGFGTLKTAAISEKE
NKTDKSTGQRPLFRVFDCVYLNDKLLTPYTLRDRRRALESAVKDVKRRLEIHPYIEAHSH
TEIEPALRKVVAESSEGLVLKNPRSMYRLNDRNADWMKVKPEYMSEFGESLDCIVVGGYF
GSGHRGGAHSSFLCALLLNKDAKPGDADYEKCWSFFKVGGGFSREDYAAIRGRTEGKWKD
WDPRRPPPIIELGGHEQNRQHERPDQWIHPSDSVVLECKAASVEGSDKFRFNLTLRFPRF
RMLRTDKRWDQALSREEFYEIKANVEYKREEKEKEFEIEKSRRKRTRTTKKPIVVAGSET
ITTPYAGPQSKIFDGLSFYIMTEQLHPTKKSKVDLEALVKANGGRVVQRDSMEPNLVIVA
DKRLIKVASLEKRDTNNIVKPVWIQDTIQQNEVDNGALPYLLPFEPNRHMFYLLGDNQLD
YEANADDYGDSYARDIADVEEMRKILGATDPPQKRTKFDRESFLDQLEDHGDSLSHLKTY
MFSSTKVAFRTSDDPVWTLRAQLAGNYIRFGGGQITEDEDEEGVTHTVVPDGQTASVSRV
ADLSRVVGVGWVQKCWDESTRLDEERYQWG
NT seq
2973 nt
NT seq
+upstream
nt +downstream
nt
atggcagaagatacggagatgccagacgcagaggctgtacgtgagaacactctcatgtac
ggccacgacgacgagctcgatgagaagttccccacacgtcccatgaacctccacaagtcg
ccaccttttcacacgttattcactgatttgtttgatccgctcatggaaacacaaaagaag
ggtaggcaaccgcctgggcctcgccgaaaagccggcccacatggtcactcgaacctctcg
ccccacgaagctaagcggaacatcatcgagagattcattgcaagctggcgcaagactgtc
ggcaatgacttctacccagcaatgcgtctcattatacctgacaaggaccgagatcgtgct
atgtatggcctgaaagagaaggccatcgcaaaagtcttgatcaaactcaccaagatcagt
aaggattcggatgatgccaagcaaatgctgaactggaagcttcccggtcagttgcacaaa
gcttcagcctcaacagctggagactttgccggccgatgctaccaggtgttgtcatcaagg
cagctaaacaccaagcttggtgacatgagcatcgcagaggtcaacaatgccttggacaag
ctgtcccagcttggatcggaggacgagcaagtcaagatcttccagaggttcaacagaagg
atgaatgctgaggagatgacatggctcatccgtataatcctccgccagatgaaaatcggt
gcgactgagaagacgttcctcgacatctggcatccagatgccgaaacgctgttcaacatt
tcctccaacctacgtcgcgtatgttgggagctttacgacccaaaggtccgcttagaaggc
gaggataccgggctcagcttgatgcagtgtttccagcctcagctcgctgccttccaggat
aaaggtgggtcgttcgagaagatcgtggcgcgattgcaggccaactctgatgacgactca
ttctggatcgaggagaagctggatggagagcgtatgcagcttcacatgattgaagacccg
gaagcgccaggcggaaagcttttcggcttctggtcacgaaaagccaaagactatgcatat
ctgtacggcaagcatctacagggagacgaagctggtgccttgacaaggttcatcacagat
gcattcggcaagaacgtaaggaacataatactggacggcgaaatgattacatgggacatg
gatgtagatcatattgttggatttggtaccctcaaaactgcggctatatcagagaaggaa
aacaaaaccgacaaaagtaccggacagcggccactcttccgtgtctttgattgtgtatat
ctcaacgacaagctcctcacaccttacaccttgcgcgaccgccggcgggctctcgaaagc
gccgtgaaggatgtgaagcggcgattggaaatccatccatacatcgaagcgcactcgcac
actgagatcgagcctgcgcttcgtaaagtggtcgctgagtcttccgaaggactcgtactc
aagaacccgcgttcaatgtatcgactcaatgacaggaatgcagactggatgaaagtcaaa
cctgaatatatgtctgaatttggcgaatctctcgactgcattgttgttggtggctacttt
ggatccggccaccgtggtggtgcccactcttctttcctttgtgcattattgcttaacaaa
gatgccaagccgggagatgcagactatgaaaagtgctggtcattctttaaggttggcggc
ggtttcagtcgtgaagactacgcagccatccgcggcaggacagagggcaagtggaaagac
tgggatcccagacgacccccgcccatcattgagctcggcggtcacgaacagaatcgccaa
catgagagacctgaccaatggatacatcccagtgattctgtagtactggaatgcaaagca
gcaagcgtggagggaagcgataaattccggttcaatcttacgcttcgcttccctcgcttc
agaatgcttcgcacggacaagcgatgggatcaagcattatcgagggaagagttctatgag
atcaaggcgaacgtggaatacaagcgcgaagagaaagagaaagagtttgagatcgagaag
tcgcgccggaaaaggacgaggacgaccaagaagccaattgtggttgccggcagcgagacg
atcacaactccgtatgctggtcctcagtcgaaaattttcgatggactcagtttctacatt
atgaccgaacagttgcatccgaccaaaaagtccaaagtcgacctggaagcgcttgtcaag
gccaacggcggtagggtcgtgcagcgcgactcgatggagcccaatctcgtcatcgttgct
gataaacgtctgataaaagtagcttctctggaaaagcgcgacacgaacaatatcgttaag
cctgtgtggattcaggacaccatacagcaaaacgaggtagacaacggcgccctcccgtat
ctgcttcctttcgagccaaatcgccacatgttctacctgctgggtgacaatcagctggac
tacgaggccaacgcggacgactatggtgactcatatgctcgtgacattgccgatgttgaa
gagatgaggaagatactcggagccactgacccgccccagaagcgaaccaaattcgatcgc
gagtcgttcttggatcagctcgaagatcatggcgactctctctcccatctcaaaacctac
atgttctcaagcaccaaagtcgcttttcgaaccagcgacgaccctgtctggacactgcgg
gcacagctagcgggaaattacatccgctttggcggaggccaaatcacagaggatgaggac
gaagaaggtgttacgcacacggtcgtcccagatgggcaaaccgcttctgtttcacgtgtt
gcagatctttcgagagtcgttggcgtaggatgggtgcaaaagtgctgggacgagagcacc
aggctggacgaagagaggtatcagtggggctga
DBGET
integrated database retrieval system
