KEGG   Paenibacillus naphthalenovorans: IJ22_10880Help
Entry
IJ22_10880        CDS       T04167                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K10747  
DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
pnp  Paenibacillus naphthalenovorans
Pathway
DNA replication
Base excision repair
Nucleotide excision repair
Mismatch repair
Brite
KEGG Orthology (KO) [BR:pnp00001]
 Genetic Information Processing
  Replication and repair
   03030 DNA replication
    IJ22_10880
   03410 Base excision repair
    IJ22_10880
   03420 Nucleotide excision repair
    IJ22_10880
   03430 Mismatch repair
    IJ22_10880
Enzymes [BR:pnp01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     IJ22_10880
    6.5.1.6  DNA ligase (ATP or NAD+)
     IJ22_10880
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     IJ22_10880
DNA replication proteins [BR:pnp03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    IJ22_10880
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     IJ22_10880
DNA repair and recombination proteins [BR:pnp03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     IJ22_10880
   NER (nucleotide excision repair)
    Other NER factors
     IJ22_10880
   MMR (mismatch exicision repair)
    Other MMR factors
     IJ22_10880
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
UniProt: 
LinkDB All DBs
Position
1106058..1106921
Genome map
AA seq 287 aa AA seqDB search
MHMLISPMLLESQDNPFSDPAFIFEPKMDGHRLILIKKGDETRLFTREQTECTRQYPELH
DVPVEGDVILDGEVCCIDPDTGASDFELVMERLQLTKREKIHFFAKQRPVHYVVWDILQH
KGRDLRNLSLMKRRSILESVMVTNERFHIILQVNERGEELYNLLVEQSMQGMVAKKKDSP
YVSRRSHDWLKIMNYKYEDVWITGYRKEGIGWLAEVEDHGRKRPVGMIESDISPLQKKEF
YDVTQQLITGEDNQFVYIQPLIKAKVKFYHWTRHGFLRKPSLVELKF
NT seq 864 nt NT seq  +upstreamnt  +downstreamnt
atgcatatgctgattagtcctatgctccttgagtctcaagacaatcctttctcagacccg
gcttttatattcgaaccgaaaatggatgggcaccggctaatcttgatcaagaagggtgat
gaaacacggctgtttacaagagagcagacggaatgtacacgccagtatcccgaacttcat
gatgttcctgtggaaggtgacgttattcttgacggcgaggtctgctgtattgatccggat
acgggagcttcggatttcgagcttgtcatggaacgtttgcagttaacaaagcgggagaaa
atccacttttttgccaagcagcgtccggtgcattatgtggtctgggatatccttcaacat
aaaggccgcgacttgcgcaatctttcattaatgaaaagaaggtctatccttgaatccgtt
atggtgacaaatgagcgttttcacatcatacttcaagtaaatgaaagaggcgaggagctt
tacaatctgttggttgaacaatccatgcaggggatggttgccaagaaaaaagacagtccg
tacgtttccaggcgctctcatgactggctaaagatcatgaattacaagtacgaggatgtg
tggattacagggtatcgaaaagagggcattggctggttggcagaggtggaagatcatggg
cggaagcggccggtcgggatgattgaatccgatatatccccgctgcagaagaaggagttt
tatgatgtcactcaacagctgattacaggtgaggacaatcaatttgtatatattcaacct
ttgatcaaggccaaagtaaaattttaccattggactcgccacggttttttaaggaagcct
tccttggttgaattaaaattttaa

DBGET integrated database retrieval system