Pseudomonas nitroreducens: G5B91_16345
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Entry
G5B91_16345 CDS
T08828
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pnt
Pseudomonas nitroreducens
Pathway
pnt03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pnt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
G5B91_16345 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pnt03400
]
G5B91_16345 (ligD)
Enzymes [BR:
pnt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
G5B91_16345 (ligD)
DNA repair and recombination proteins [BR:
pnt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
G5B91_16345 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QIE87755
UniProt:
A0A6G6IX87
LinkDB
All DBs
Position
3447793..3450321
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AA seq
842 aa
AA seq
DB search
MAGAKAVKDSTLKEYARKRDFSGTPEPRGGTPADREGEAAFVVQKHDASHLHYDFRLELD
GVLKSWAVPKGPCLDPSVKRLAIEVEDHPLDYAGFEGHIPEGHYGAGDVIVWDEGRWMPI
GDPHEGLGNGHLKFRLAGSKLTGSWNLIRTRMAGRQPQWFLIKGRDDQARDYPRYDILAE
QPLSVATGKALPGEVAQRKQASAKRSRPVQPAKKRAAGKASLPAAMSPELATLVDAPPAG
DWRYEIKLDGYRLLARLDGGQIKLLTRNGHDWSKKLPELCAALAALPVTSAWLDGEILVM
DEEGRPDFQRLQNAFDAAVSAPIHYTLFDLLWLDGEDYRNKPLEQRRQALAQVLRGNGDD
RLRYSEDFTDDPRSILDSACRLGLEGLIGKRVGSLYTGKRSSDWIKLKCKRRQEFVIVGY
SAPKGSRSSFGALLLGLHDENGELRYAGKVGTGFSAASLKRLHRQFQPLQRKTCPLREPP
KGAEAKGVTWLRPELLGEVAFAEITREGRVRQAVFHGLRSDKPAEAIVEEKPKKAARAVA
ARPSRSNSGNVLEGVTITHPERVVDPTSKLRKIDVVRYYDKAAEYLLPWLADRPVSLVRA
PDGVAGEQFFQRHASRTGIPGAEQLDPQLDPGHAPLLRIASAKALVGAAQMGALELHTWN
AALDDLEKPDRFVLDLDPDPALPWQRMIEATQLTLTLLDELGLTAFLKTSGGKGMHILVP
LQRHHGWDEVKDFAHAISRHMARLMPDRFSAVSGPKNRVGKIFIDYLRNSRGASTVCVWS
VRAREGLPVSVPISRHELARLKSAHQWTLANVDERLAGADPWADWAKTRQRLSARMRGKL
DG
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
atggccggggccaaagccgtcaaggacagcaccctgaaggaatacgcgcgcaaacgcgac
ttcagcggcactcccgagccacggggcggaacgccggcggaccgggaaggggaggctgcc
ttcgtcgtgcagaagcacgacgcgagccacctgcattacgacttccgcctcgaactcgat
ggcgtgctcaagagctgggcggtgcccaagggcccctgcctcgatcccagcgtgaagcgc
ctggccatcgaggtggaggatcatccgctggactacgcgggcttcgaagggcatatcccg
gaaggtcattacggtgccggcgacgtgatcgtctgggacgagggccgctggatgcccatt
ggcgatccccacgaaggcctcggcaacggccatctcaagttccgcctggcgggcagcaag
ctgaccggcagctggaacctgatccgcacccgcatggccgggcggcagccgcagtggttc
ctgatcaaggggcgggatgaccaggcacgggactacccgcgttacgacatcctcgccgag
cagccgctgagcgtcgccaccggaaaggcattgcccggcgaggttgcgcagcgcaagcag
gcttcggcaaagcgctccaggccggtgcagcctgcgaagaaaagagcggcgggcaaggcc
agcctgccggcggccatgtctcccgaactcgccactctggtggacgcgccaccggcaggc
gactggcgctacgagatcaagctcgatggctaccgcctgcttgcccggctcgacggcggc
cagatcaagttgctgacccgcaacggccacgactggtcgaagaagctgcccgaactgtgc
gcggcgctggcggcactgccggtgacgtccgcctggctggacggcgagatactggtgatg
gacgaggagggccgaccggacttccagcgcctgcagaatgccttcgatgccgcggtctcg
gcgcccatccactacaccttgttcgacctgctctggctggatggcgaggattaccgcaac
aagcccctggagcagcggcgccaggcgctggcacaggtcctgcgcggcaatggcgatgat
cgcctgcgctattccgaggacttcaccgacgacccgcgcagcatcctcgacagcgcctgc
cggctcggcctggaagggctgatcggcaagcgtgtgggcagcctctatacggggaaacgc
tcctccgactggatcaagctcaaatgcaagcgccggcaggagttcgtgatcgtcggctac
agcgcacccaagggctcgcgctcgtctttcggcgccttgctgctcgggctgcacgacgag
aatggcgagctgcgctacgccggcaaggtgggcaccggtttcagcgcggccagcctgaag
agactgcatcggcagttccagccgctgcagcgcaagacctgcccgctgcgggagccgccc
aagggagccgaggccaagggcgtgacctggctgcgtccggagttgctgggcgaagttgcc
ttcgccgagatcacccgtgaaggcagggtccgccaggcggtgttccacggtctgcgcagt
gacaagccggctgaggcgatagtcgaggaaaaaccgaagaaggctgcccgcgccgtcgct
gccagaccgtcgcgctcgaacagcggcaatgtcctggagggcgtgaccatcacccatccc
gagcgagtggtcgatcccaccagcaagctgcgcaagatcgatgtggtgcgctactacgac
aaagccgcggagtacctgctgccctggctggccgaccgtccggtgtccctggtgcgggcg
cccgatggtgtggcgggcgagcagttcttccagcgccatgcctcgcgtaccgggatcccc
ggcgccgaacaactggacccacagcttgaccccggtcacgcaccgctgctgcgcatcgcc
tcggccaaggcgctggtgggcgccgcgcagatgggtgcgctggagctgcatacctggaac
gccgcgctcgatgacctggagaaacccgaccgcttcgtcctggaccttgaccccgatccg
gcgctgccctggcagcggatgatcgaggcgacccagttgaccctcacgctgctggacgaa
ctcggcctgacagccttcctcaagaccagcggcggcaagggcatgcacatcctcgtgccg
ctgcagcggcaccatggctgggatgaagtgaaggacttcgcccatgcgatcagccgacac
atggcccggctgatgccggaccgcttcagcgccgtatcggggccgaagaaccgcgtcggg
aagattttcatcgattacctgcgcaacagccggggcgccagcacggtgtgcgtgtggtcg
gtacgtgcacgggaggggctgccggtctcggtgccgatcagtcgccatgagcttgccagg
ctcaagtcggcacaccaatggaccctcgcgaatgtcgacgagcgtctggcaggcgccgac
ccctgggccgactgggcgaagacccggcaacggttgagcgcaaggatgcgcggcaaactg
gacggctga
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