KEGG   Polaromonas sp. JS666: Bpro_2416Help
Entry
Bpro_2416         CDS       T00343                                 

Definition
(GenBank) ATP dependent DNA ligase
  KO
K10747  
DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
pol  Polaromonas sp. JS666
Pathway
DNA replication
Base excision repair
Nucleotide excision repair
Mismatch repair
Brite
KEGG Orthology (KO) [BR:pol00001]
 Genetic Information Processing
  Replication and repair
   03030 DNA replication
    Bpro_2416
   03410 Base excision repair
    Bpro_2416
   03420 Nucleotide excision repair
    Bpro_2416
   03430 Mismatch repair
    Bpro_2416
Enzymes [BR:pol01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Bpro_2416
    6.5.1.6  DNA ligase (ATP or NAD+)
     Bpro_2416
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     Bpro_2416
DNA replication proteins [BR:pol03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    Bpro_2416
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     Bpro_2416
DNA repair and recombination proteins [BR:pol03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     Bpro_2416
   NER (nucleotide excision repair)
    Other NER factors
     Bpro_2416
   MMR (mismatch exicision repair)
    Other MMR factors
     Bpro_2416
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
JGI: 
UniProt: 
LinkDB All DBs
Position
complement(2514985..2515905)
Genome map
AA seq 306 aa AA seqDB search
MPAHTPSANTRLTIAPFRAQTLALLLALAGLLTPALPLLAAETSPPLMLAKVYHVGVSLA
DYWVSEKYDGVRGYWDGEKLLTRGGERIVAPAWFTADWPKVAMDGELWAGRGQFAKAVST
VRQQTPDDAAWRAMRFMVFDLPAQGGPFTERIPALNGVVSRIDQPWVQAVAQFKVANHRA
LQNLLATTEKHAGEGLMLHRGASLYMGQRTDDLLKVKTHEDTEARVVAHIPGKGKYVGVL
GALLVEMPGVDGKPGRRFKLGSGFNDEQRQNPPVLGSTVTYRFRGLNGSGVPRFASFMRV
REDQPV
NT seq 921 nt NT seq  +upstreamnt  +downstreamnt
atgcccgcacacacgccatctgccaacacccgcctgaccattgccccctttcgcgcccag
acgcttgcgctgctgctggcgctcgccgggctgctcacgcctgccctgcccttgttggca
gctgagacaagcccgccgctgatgctggccaaggtttatcacgtgggtgtttcgctggcc
gattactgggtcagcgaaaaatacgatggcgtgcgcggctactgggacggtgagaagttg
ctgactcgcggcggcgagcgcatcgtggctccggcctggttcacggcggattggcccaag
gtagccatggatggcgaactctgggctggccgcggccagtttgcgaaagcggtgtccacg
gtacgccagcaaacccctgacgatgcagcctggcgcgccatgcgtttcatggtgtttgac
ttacccgcgcaaggcggcccattcaccgaacggattcccgccttgaatggcgtggtgagc
cggattgaccagccttgggtgcaagcggtcgcccaattcaaggtggccaaccaccgggct
ttgcagaacctgctggccacaaccgagaaacacgccggcgaaggactgatgctgcaccgg
ggcgcatccctctacatgggccagcgcaccgacgacctccttaaggtcaaaacccatgag
gacacggaagcccgtgtggtcgcgcacattcctggcaagggaaaatacgtcggcgttttg
ggtgcactgctggtagagatgccgggggtggacggcaaacctggacgacgcttcaagctt
ggcagcggattcaacgacgagcaacgccagaacccgccagtcctgggcagcactgtcacc
taccgctttcgcggcctgaacggcagcggcgtccccaggtttgccagcttcatgcgggtg
agagaagaccagcccgtctga

DBGET integrated database retrieval system