Polaromonas sp. JS666: Bpro_4568
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Entry
Bpro_4568 CDS
T00343
Name
(GenBank) Excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
pol
Polaromonas sp. JS666
Pathway
pol03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pol00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Bpro_4568
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pol03400
]
Bpro_4568
DNA repair and recombination proteins [BR:
pol03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Bpro_4568
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Bpro_4568
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
AAA_16
AAA_29
AAA_23
nSTAND1
RsgA_GTPase
AAA_21
DnaJ_CXXCXGXG
nSTAND3
ATPase
BCA_ABC_TP_C
AAA_25
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
ABE46451
UniProt:
Q122U1
LinkDB
All DBs
Position
4834051..4837110
Genome browser
AA seq
1019 aa
AA seq
DB search
MESFAAPFPVNSPDDSKYLASVLAAQRISIRGARTHNLKNIDLDIPRNQLVVITGLSGSG
KSSLAFDTLYAEGQRRYVESLSTYARQFLQLMDKPDVDMIEGLSPAISIEQKATSHNPRS
TVGTVTEIHDYLRLLFARAGTPYCPEHDLPLQAQSVSEMVDAVLALPEDTRLMILAPVAR
ERKGEFVEVFAEMQAQGYVRFRVDGTAYEFDDLPKLKKAEKHNIDVVIDRLKVRSDMQQR
LAESFEAALRLADGKAIALEMDTEKEHLFSAKFSCPVCSYSLSEMEPRLFSFNSPVGACP
NCDGLGHREFFDPARVVAFPSLSLASGAVKGWDRRNGYYFSMLESLARHYQFDIDTAFED
LPVKVRQVVLHGSGEEEIKFSYVMDSGNSAGKKVSKKHAFEGVITNFERRYRETDSAAVR
EELARYRGVQPCPDCEGTRLRTEARHVYLVSAPDEGAEASASARGQRKAIYEISRTTLRE
SFDYFNQLKMQGAKAEIAAKVVREIGLRLKFLNDVGLNYLSLDRSAETLSGGESQRIRLA
SQIGSGLTGVMYVLDEPSIGLHQRDNDRLIGTLKHLRDIGNSVLVVEHDEDMIRAADHVI
DMGPGAGIHGGRVMAQGTFEEVKANPDSLTGQYLAQTLKIAVPTRRTPWLPTVKAVEAAE
KKKVSRFPQSPAAERRAAREVVHQATLGDMQALRVVNATGHNLKGVNVEFPVGLLTCVTG
VSGSGKSTLVNDTLYAAVARTLYRAHEEPATHDAIEGIEHFDKVINVDQSPIGRTPRSNP
ATYTGLFTPIRELMAEMNTARERGYGAGRFSFNVAGGRCEACQGDGVVKVEMHFLPDVYV
PCDVCKGMRYNRETLEVQYKGKNIAQILDLTVEVAAEFFKAVPTIARKLHTLLDVGLSYI
KLGQAATTLSGGEAQRVKLALELSKRDTGRTLYILDEPTTGLHFADIDLLLKVLHQLRDA
GNTIVVIEHNLDVIKTADWLIDMGPEGGAGGGTVVGVGTPEAIAANPESHTGRYLKRLL
NT seq
3060 nt
NT seq
+upstream
nt +downstream
nt
atggagagttttgcggcccccttccctgtgaactctcctgacgatagcaaataccttgcc
agcgtgctcgccgcccagcgcatcagcatccgcggggcgcgcacgcacaacctcaagaac
atcgacctcgacattccgcgcaaccagctggtggtgatcaccgggctgagcgggtcgggc
aagtcatcgctggcctttgacaccctgtatgccgagggccagcgccgctatgtggaaagc
ctgtccacctacgcgcggcagtttttgcagctgatggacaagcccgatgtggacatgatc
gagggcctgtcgccggcgatttccatcgagcagaaagccacctcgcacaacccgcgctcc
acggtgggcacggtgacggaaatccacgactacctgcgcctgctgtttgcgcgcgccggc
accccctattgccccgagcacgacctgccgctgcaggcgcaaagcgtcagcgagatggtg
gacgccgtgctggccctgcccgaagacacccggctgatgatcctggcgcccgtggcgcgt
gaacgcaagggcgagtttgtcgaggtattcgccgagatgcaggcccagggctatgtgcgc
tttcgcgtcgacggcacggcttatgaatttgacgacctgcccaaactcaagaaggccgag
aagcacaacatcgacgtggtgattgaccgcctcaaggtgcgcagcgacatgcagcagcgg
ctggccgaaagctttgaagcggcgctgcgcctggccgacggcaaggcgattgcgctggaa
atggacacggagaaggagcacctgttcagcgccaaattctcctgcccggtttgcagctac
tcgctcagcgagatggagccgcggcttttctcgttcaactcgcccgtgggcgcctgcccg
aattgcgacggcctcggtcaccgggagtttttcgacccggcccgcgtggtggcctttccc
tccctgagcctggccagcggcgccgtcaagggctgggaccggcgcaacggctattacttc
tcgatgctggagagcctggcccggcattaccagttcgacattgacacggcctttgaagac
ctgccggtcaaggtgcggcaggtggtgctgcatggctccggtgaggaagagatcaaattc
agctacgtgatggactcgggcaattccgcgggcaagaaagtcagcaagaagcatgcgttc
gaaggcgtgatcaccaactttgaacgccgctaccgcgagaccgactctgccgccgtgcgc
gaagaactggcgcgctaccgcggggtgcagccctgccccgactgcgagggcacgcgcctg
cgcaccgaagcccgccacgtctacctggtcagcgcaccggacgagggcgccgaggcctct
gcctctgcgcgcggccagcgcaaggccatctacgaaatcagccggaccacgctgcgcgaa
agctttgactacttcaaccagctgaagatgcagggcgccaaggccgagattgccgccaag
gtggtgcgcgagatcggcctgcgcctgaagttcctcaacgacgtggggctcaattacctg
agcctggaccgcagcgccgagaccctctcgggcggcgaatcgcagcgcatccggctggcc
tcgcagatcggctcggggctgaccggcgtgatgtatgtgctcgacgagcccagcatcggc
ctgcaccagcgcgacaacgaccgcctgatcggcacgctcaagcacctgcgggacatcggc
aacagcgtgctggtggtcgagcatgacgaagacatgatccgcgcggccgaccatgtgatc
gacatggggccaggcgccggcattcacggcgggcgcgtgatggcgcagggcacgtttgaa
gaagtcaaggccaacccggactcgctgaccggccaatacctggcgcagaccctgaagatt
gccgtgcccacgcgccgcaccccctggctgcccaccgtgaaggcggtggaggctgccgag
aaaaagaaggtctcgcgctttccgcaaagccccgccgcagagcgccgcgccgcgcgcgaa
gtcgtgcatcaggccacgctgggcgacatgcaggccttgcgcgtcgtcaatgccacgggc
cataacctgaagggcgtgaatgtcgaattccccgtgggcctgctcacctgcgtcaccggc
gtctcgggctcgggcaagtccacgctggtcaacgacacgctgtacgccgccgtggcgcgc
acgctgtaccgggcacacgaagagcctgcaacccacgacgccattgaaggcatagagcac
ttcgacaaggtcatcaacgtcgaccagtcaccgattggccgcacgccgcgcagcaacccg
gccacctacaccggcctgttcacgcccatccgcgagctgatggccgaaatgaacacggcg
cgcgaacgcggctacggcgccgggcgcttcagcttcaacgttgccggcggccgctgcgaa
gcctgccagggcgacggcgtggtgaaggtcgagatgcacttcctgcccgacgtctatgtg
ccctgcgacgtctgcaagggcatgcgctacaaccgcgaaacgctggaagtgcaatacaag
gggaaaaacatcgcgcagatcctggacctcacggtcgaggtggccgccgaatttttcaaa
gccgtcccgacgattgcgcgcaagctgcacacgctgctggatgtgggcctgtcgtacatc
aagctgggccaggccgccacgacgctgtcgggcggcgaggcacagcgcgtcaagctcgcg
ctggagctgagcaaacgcgacaccggccgcacgctgtacatcctggacgagccgaccacc
ggtctgcactttgccgatattgatttgctgctcaaggtgctgcaccagctgcgcgacgcg
ggcaacacgattgtggtgatcgagcacaacctcgatgtcatcaagaccgccgactggctg
atcgacatggggcctgagggaggagccgggggtggcaccgtggtgggcgtgggcacgcct
gaagccattgcggccaacccggagagccacaccggccgctatttgaaacgcctgctttga
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