Polaribacter sp. BM10: BXQ17_04135
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Entry
BXQ17_04135 CDS
T04746
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pola
Polaribacter sp. BM10
Pathway
pola03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pola00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BXQ17_04135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pola03019
]
BXQ17_04135
03009 Ribosome biogenesis [BR:
pola03009
]
BXQ17_04135
Enzymes [BR:
pola01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BXQ17_04135
Messenger RNA biogenesis [BR:
pola03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BXQ17_04135
Ribosome biogenesis [BR:
pola03009
]
Prokaryotic type
rRNA helicases
BXQ17_04135
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
RecG_N
AAA_19
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
AQS93316
UniProt:
A0A1U9L5E8
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All DBs
Position
945541..947379
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AA seq
612 aa
AA seq
DB search
MSTFLELGLKEPINKALTDLGYEKPTVIQEKAIPQIISSTDDLKAFAQTGTGKTAAFSLP
ILELLDSNSKNVQAIILSPTRELAVQIGNNIKDFCKYLPDVKVTTVYGGSSMEEQIRSLK
KGSQIVVGTPGRTVDLINRRALKLGNVEWLVLDEADEMLNMGFKDELDSVLDATPETKQT
LLFSATFPREVEAIARNYMTKPVEITSGEKNQGSDNVSHEYYAVTERTRYPALKRIADLN
PNIYAIIFCRTRRETQEVADNLIKDGYNADSLHGDLSQGQRDSVMGKFRKKTIQILVATD
VAARGLDVTELTHVINHKLPDQVENYNHRSGRTGRAGNKGISIVLVNGKEKGKLRQIERI
IKKKFVEAKVPSGKEICQNQLMHLIDKVQNIEVNETQINEFLPSIYEKLESLDREELIKK
FVSLEFNTMLAYYENAKDLNDLSSRDNSRARSTNENMTRFFINIGRKDNLNPGKLIGLIN
EQNIGDKIEIGAIDILDTFSFFEIDKNFEDKTLETFSSNQPDFEGRSVNVEVTKKERSGG
GRRGGRKKSFGKKDGGFGRRRSSEGSSSSSRRSDSGNRVRSDRRSSDRPDRSSRSGGDRK
ASSGFGRKRRES
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacatttttagagttaggtttaaaagaacctataaacaaagcattaacagattta
ggttacgaaaaaccaactgttattcaagaaaaagcaattccacaaattatttcttctaca
gacgatttaaaagcatttgcacaaacaggtacaggtaaaactgcagcttttagtttacca
attttagaacttttagattctaatagtaaaaatgtacaagcaattattttatctccaaca
agagaacttgcagtacaaattggtaacaacatcaaagacttttgtaaatatttaccagac
gtaaaagtaactacagtatacggtggttctagtatggaagaacaaattagatctttaaaa
aaaggatctcagatagttgttggtactccaggtagaacagtagatttaatcaatagaaga
gcattaaaattaggaaacgttgagtggttagttttagatgaagccgacgaaatgttaaac
atgggtttcaaagatgagttagatagcgttttagatgctacaccagaaacgaaacaaaca
ttgttattttctgcaacttttcctagagaagtagaagctattgcaagaaactacatgaca
aagccagtagaaattacttctggtgaaaagaaccaaggttctgataatgtaagtcatgag
tattatgctgtaacagaaagaactcgttatccagcattaaaaaggatcgcagatttaaat
ccaaatatatatgctattattttttgtagaactcgtagagaaactcaagaagtagcagat
aatttaattaaagacggttacaatgcagattctttgcacggagatttatctcaaggacaa
agagattctgtaatgggtaaattcagaaaaaagacaattcaaattttagttgcaacagat
gtagcagcaagaggattagacgttactgaattaacgcacgttattaaccataaattacca
gaccaagtagaaaactacaatcatagaagtggtagaactggtagagctggtaacaagggt
atttctatagttttagttaatggtaaagaaaaaggaaaactaagacaaatagaaagaata
ataaaaaagaaatttgttgaagctaaagtgccttctggtaaagaaatttgtcagaatcaa
ttaatgcatttaatcgataaagttcaaaatatagaagtaaatgaaactcaaattaacgag
tttttaccaagtatttatgaaaaattagaatctttagatagagaagagttaattaaaaaa
ttcgtttcgttagaattcaatacaatgttggcatactacgaaaacgctaaagatttaaac
gatttgtcttctagagataactctagagcaagatctactaatgaaaacatgacacgtttt
ttcatcaatattggtagaaaagataatttaaatccaggtaaattaattggtttaattaac
gagcaaaatatcggtgataaaattgaaattggtgctatagatattctagatactttttct
ttctttgaaattgataaaaacttcgaagacaaaactttagaaactttctctagcaatcaa
cctgattttgaaggtagatctgtaaatgtagaagttactaaaaaagaacgctctggtggc
ggaagaagaggcggacgcaaaaaatcttttggtaaaaaagatggcggttttggtagacgt
agaagttctgaaggttcttcatcatcttctagaagaagtgattcaggaaatagagttcgt
tctgatagacgttcttctgatagaccagacagaagttctagaagcggaggagatagaaaa
gcttctagcggattcggaagaaaacgtagagaaagctag
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