Pongo abelii (Sumatran orangutan): 100432978
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Entry
100432978 CDS
T01416
Symbol
LIG1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
pon
Pongo abelii (Sumatran orangutan)
Pathway
pon03030
DNA replication
pon03410
Base excision repair
pon03420
Nucleotide excision repair
pon03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pon00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
100432978 (LIG1)
03410 Base excision repair
100432978 (LIG1)
03420 Nucleotide excision repair
100432978 (LIG1)
03430 Mismatch repair
100432978 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pon03032
]
100432978 (LIG1)
03400 DNA repair and recombination proteins [BR:
pon03400
]
100432978 (LIG1)
Enzymes [BR:
pon01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
100432978 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
100432978 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
100432978 (LIG1)
DNA replication proteins [BR:
pon03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
100432978 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
100432978 (LIG1)
DNA repair and recombination proteins [BR:
pon03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
100432978 (LIG1)
NER (nucleotide excision repair)
Other NER factors
100432978 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
100432978 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
PucR
DDR
Presenilin
DUF1685
Motif
Other DBs
NCBI-GeneID:
100432978
NCBI-ProteinID:
XP_024092288
Ensembl:
ENSPPYG00000010188
LinkDB
All DBs
Position
19:complement(46414232..46468698)
Genome browser
AA seq
919 aa
AA seq
DB search
MQRSIMSFFHPKKESKVKKPEKEASNSSRETEPPPKAALKEWNGVVSESDSPVKRPGRKA
AQVLGSEGEEEDEALSPAKGQKPAPDCSQVSPPCPATSPENNASLSDTPPMDSSPSGIPK
RRTARKQLPKRTIQEVLEEQSEDEDRDAKRKKEEEEAETTKESLTEAEVATEKEGEDGDQ
PTTPPKPLKTSKAETPTESVSEPEVATKQELQEEEEQTKPPPRAPKTLSSFFTPRKPAIK
KEVKEEKPGAPGKEGTAEGPLDPCGYNPAKNNYHPLEDACWKPGQKVPYLAVARTFEKIE
EVSARLRMVETLSNLLRSVVALSPPDLLPVLYLSLNHLGPPQQGLELGVGDGVLLKAVAQ
ATGRHLESVRAEAAEKGDMGLVAENSRSTQRLMLPPPPLTASGVFSKFRDIARLTGSAST
AKKIDIIKGLFVACHHSEARFIARSLSGRLRLGLAEQSVLAALSQAVSLTPPGQEFPPAV
VDAGKGKTAEARKTWLEEQGMILKQTFCEVPDLDRIIPVLLEHGLERLPEHCKLSPGIPL
KPMLAHPTRGVSEVLKRFEEAAFTCEYKYDGQRAQIHALEGGEVKIFSRNQEDNTGKYPD
IISRIPKIKLPSVTSFILDTEAVAWDHEKKQIQPFQVLTTRKRKEVDASEIQVQVCLYAF
DLIYLNGESLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDVEQIAEFLEQSVKDSCE
GLMVKTLDVDATYEIAKRSHNWLKLKKDYLNGVGDTLDLVVIGAYLGRGKRAGRYGGFLL
ASYDEDSEELQAICKLGTGFSDEELEEHHQSLKALVLPSPRPYVRIDGAVIPDHWLDPSA
VWEVKCADLSLSPIYPAARGLVDSDKGISLRFPRFIRVREDKQPEQATTSAQVACLYRKQ
SQIQNQQGEDSGSDPEDTY
NT seq
2760 nt
NT seq
+upstream
nt +downstream
nt
atgcagcggagtatcatgtcatttttccaccccaagaaagagagtaaagtgaagaagcct
gagaaggaggcatccaacagcagcagagagacggagccgcctccaaaggcggcactgaag
gagtggaatggagtggtgtccgagagtgactctccagtgaagaggccagggaggaaggcg
gcccaggtcctgggcagcgaaggggaagaggaggatgaagcccttagccctgctaaaggc
cagaagcctgccccagactgctcacaggtctccccgccctgtcctgccacatctcctgaa
aacaacgcttccctctctgacacccctcccatggacagttccccatcagggatcccgaag
cgtcgcacagctcggaagcagctcccgaaacggaccattcaggaagtcctggaagagcag
agtgaggacgaggacagagacgccaagaggaagaaggaggaggaagaagcagagaccacg
aaagaaagcctcacagaggctgaagtggcaacagagaaggaaggagaagacggggaccag
cccaccacgcctcccaagcccctgaagacctccaaagcagagaccccgacggaaagcgtt
tcagagcctgaggtggccacaaagcaggaactgcaggaggaggaggagcagaccaagcct
cccccgagagctcccaagacgctcagcagcttcttcaccccccggaagccagcaatcaaa
aaagaagtgaaggaagagaagccgggggctccaggaaaggagggaactgctgagggaccc
ttggacccatgcggttacaatcctgccaagaacaactatcatcccttggaagatgcctgc
tggaaaccgggccagaaggtcccttacctggccgtggcccggacgtttgagaagatcgag
gaggtgtctgctcggctccggatggtggagacgctgagcaacttgctgcgctccgtggtg
gccctgtcgcctccagacctcctccctgtcctctacctcagcctcaaccaccttgggcca
ccccagcagggcctggagcttggcgtgggtgatggcgtccttctcaaggcggtggcccag
gccacaggtcggcatctggagtccgtccgggctgaggcagccgagaaaggcgacatgggg
cttgtggccgagaatagccgcagcacccagaggctcatgctgccaccacctccactcact
gcctccggggtcttcagcaagttccgcgacatcgccaggctcaccggcagtgcttccaca
gccaagaagatagacatcatcaaaggcctctttgtggcctgccaccactcagaagcccgg
ttcatcgccaggtccctgagcggacggctgcgccttgggctggcagagcagtcggtgctg
gccgccctctcccaagccgtgagcctcacgcccccgggccaagaattcccaccagccgtg
gtggatgctgggaagggcaagacagcagaggcccgaaagacttggctggaggagcaaggc
atgatcctaaagcagacattctgcgaggttcccgacctggaccgaattatccccgtgctg
ctggagcacggcctggaacgtctcccggagcactgcaagctgagcccagggattcccctg
aaaccaatgttggcccatcccacgcggggcgtcagcgaggtcctgaaacgctttgaggag
gcagctttcacctgtgaatacaaatatgatgggcagagggcacagatccacgccctggaa
ggcggggaggtgaagatcttcagcaggaatcaggaagacaacactgggaagtacccggac
atcatcagccgcatccccaagattaaacttccatcggtcacatcctttatcctggacacc
gaagctgtggcttgggaccatgaaaagaagcagatccagccattccaagtgctcaccacc
cgcaaacgcaaggaggtggatgcgtccgagatccaggtgcaggtgtgtttgtacgccttc
gacctcatctacctcaatggagagtccctggtacgtgagcccctttcccggcgccggcag
ctgctccgggagaactttgtggagacggagggcgagtttgtcttcgccacctccctggac
accaaggacgtcgagcagatcgctgagttcctggagcagtcggtgaaagactcctgcgag
gggctgatggtgaagaccctggatgttgatgccacctacgagatcgccaagagatcgcac
aactggctcaagctgaagaaggactaccttaatggcgtgggtgacaccctggacctggtg
gtgatcggcgcctacctgggccgggggaagcgggccggccggtacgggggcttcctgttg
gcctcctacgacgaggacagtgaggagctgcaggccatatgcaagcttggaactggcttc
agcgacgaggagctggaggagcatcaccagagcctcaaggccctggtgctgcccagccca
cgcccttacgtgcggatagatggtgctgtgattcccgaccactggctggaccccagcgcc
gtgtgggaggtgaagtgtgctgacctctccctctcccccatctaccctgctgcgcggggc
ctggtggatagtgacaaggggatctcccttcgcttccctcggtttattcgagtccgtgaa
gacaagcagccggagcaggccaccaccagtgcccaggtggcctgtttgtaccggaagcaa
agtcagattcagaaccaacaaggcgaggactcaggctctgaccctgaagatacctactaa
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