Populus trichocarpa (black cottonwood): 112326168
Help
Entry
112326168 CDS
T01077
Name
(RefSeq) DNA mismatch repair protein MSH6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
112326168
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pop03400
]
112326168
DNA repair and recombination proteins [BR:
pop03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
112326168
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_I
MutS_III
MutS_IV
MutS_II
PTM_DIR17_Tudor
Motif
Other DBs
NCBI-GeneID:
112326168
NCBI-ProteinID:
XP_052303092
LinkDB
All DBs
Position
14:8180644..8197073
Genome browser
AA seq
1343 aa
AA seq
DB search
MAPSRKPSNGRSPIVNPQRQITAFFSKTTTPSPSPSPTLSKKQIPKSHTKPNPNPSSRTQ
SPSSSPTTPSPVQSKPKKPLLVIGQTPSPSPSKVGVYGKEAVERRVRVYWPLDKSWYEGL
VKSYDDESKKHLIQYDDSEEELLDLNNEKIEWVEPCVKKFKRLRRGSLGFRKIVLEDDEM
ENVEADNGGAGGGSGGDDSSDEDWGKNAEKDVSEEEDVDLMDEEEADDGKKGKRGGKDSR
KRKASGEGGKLDLGKKGKSGGDASTGGVKVSVVEPVKNKENGVFNGFENALMTYASERFS
TREAEKFPFLGRPTDVHLDVVRERRDAKRRRPGDVGYDPRTLYLPAEFAKSLTGGQRQWW
EFKSKHMDKVLFFKMGKFYELFEMDAHVGAKELDLQYMKGEQPHCGFPEKNFSLNVEKLA
RKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVITKGTLTEGEFLSANPDASYL
MALTESSQSLANQGLERIFGVCVVDVTTSRIILGQFGDDAECSSLCCLLSELRPVEIVKP
AKMLSSETERVMVRHTRNPLVNELAPLSEFWDAERTVQEVKTIYKHIGDLSASGPLNKTD
LDTTNLNVGEYRPSCLPSILLEFVNKGENGSLALSALGGALYYLKQAFLDETLLRFAKFE
SLPCSDFCEVAKKPYMILDAAALENLEIFENSRNGDTSGTLYAQLNHCVTAFGKRLLKTW
LARPLYHLESIKDRQDAVAGLRGVNQPMMLEFQKVLSRLPDIERLLARIFSTSEANGRNA
NKVVLYEDAAKKQLQEFISALRGCELVAQACSSLAVILENVESGQLHHLLTPGKGLPDIL
PILKHFKSAFDWVEANNSGRIIPHEGVDVEFDSACEKVKEVESSLARHLKEQQKLLGDKS
ITYVTVGKEAYLLEVPEHLRGSIPQDYELRSSKKGFYRYWTPSIKKFLGELSQAESEKES
ALKSILQRLIVCFCKYHDKWRQLVSATAGRGSHSFLGRNHCHGMISIHFSRLKLVTHDAE
LDVLISLAIASDFYEGPACCPTIVGSSLSSQVPCLSAKKLGHPVLRSDSLGKGAFVPNDI
SIGGSGRASFILLTGPNMGGKSTLLRQVCLAVILAQIGADVPAESFELSPVDRIFVRMGA
KDHIMAGQSTFLTELSETALMLSSATCNSLVALDELGRGTSTSDGQAIAESVLEHFVHKV
QCRGMFSTHYHRLAVDYQKDSKVSLYHMSCQVGNGVGVEEVTFLYRLRPGACPKSYGVNV
ARLAGLPDSILHNAAAKSREFEAVYGRHRKGSEGKLAIQSCDKMAVLIRSLINATTSLSG
HKSAGIDISSVTKLQDKARIFLQ
NT seq
4032 nt
NT seq
+upstream
nt +downstream
nt
atggcaccgtcgcgtaaaccgagcaacggtagatcaccaatagtaaatccacagcgccaa
ataactgccttcttctccaagacgacgactccttctccatctccttctcccacgctctct
aaaaaacaaatccctaaatcccatactaaacctaaccctaaccctagctctcgaacccaa
agccctagttctagcccaactactccttcgccagtccaatctaagcctaaaaaaccccta
ctagttattggacaaactccttcaccgtctccttcaaaagttggagtgtatggcaaagag
gcggtggagaggagggttagggtttactggcccctggataagagctggtacgagggtctt
gtcaaatcttacgatgacgagtcgaagaagcatttgatacaatatgatgattctgaagag
gaattgttggatttgaacaatgagaagattgagtgggttgagccatgtgttaagaaattt
aagaggttgcgcaggggttctttaggttttaggaagattgtgcttgaagatgatgagatg
gagaatgtcgaggccgataatggcggtgctggtggtggtagtggtggtgacgactcgagt
gatgaagattggggaaagaatgcggagaaggatgttagcgaggaggaggacgttgatttg
atggatgaggaagaagcggatgatggcaagaaaggaaagagaggtgggaaggattcgagg
aaaaggaaagcgagtggagaaggtggaaagttggatttgggaaagaagggaaagagtggt
ggggatgcgagtacgggaggagtcaaggtttcagttgtggagcctgtaaagaacaaggag
aatggagtttttaatggctttgaaaatgccttgatgacctatgcatcagaaagatttagc
acgcgtgaagctgaaaagtttccatttcttggacggcccactgatgtacatcttgatgta
gtgagagaacgcagggatgcaaagagaaggcgtcctggagatgtaggttatgatcccagg
actctatacttgcccgctgagtttgcaaagagtttaacaggtggccagagacaatggtgg
gagtttaagtcaaagcacatggataaggttttgtttttcaagatgggcaaattttatgag
ctctttgaaatggatgcccatgtaggagctaaagaactagatttgcaatacatgaaggga
gaacaacctcactgtggctttccagagaagaacttctctttgaatgtggagaaattggct
agaaagggttatcgagttcttgttgtagagcagacagaaacacctgaacagttagagctt
cgtcgcaaagagaaaggttctaaagacaaggttgtaaaacgtgaaatatgtgcggtgatt
acaaaaggaacactaactgagggggaatttctttctgcaaatcctgatgcttcttattta
atggcactgactgaaagtagccagagtttggcaaaccaaggtcttgagcggatttttggt
gtttgtgttgttgatgtcactactagcagaatcattcttggacagtttggagatgatgct
gaatgcagttcattgtgctgtctattatctgagctgaggccggtagaaattgtaaaacct
gctaaaatgcttagctccgaaactgagagagtaatggtgagacatactagaaatcccttg
gtcaatgagttggctcccctctcagaattctgggatgcggagagaactgttcaggaagtc
aaaactatctacaagcatattggtgatctttcagcttctggacccttaaataaaacagat
ttggatacaactaaccttaatgttggagaatataggccaagctgcctgcccagcattttg
ttagagtttgtcaataaaggagaaaatggaagccttgctctctcagctcttggaggcgct
ctctattatctaaaacaggcatttttggatgagacattgcttagatttgcaaaatttgaa
tcccttccttgctctgatttctgtgaggttgctaagaaaccatacatgattctcgatgct
gctgccctggagaaccttgagatttttgagaacagcagaaacggagacacttcagggacg
ctgtatgcgcaattgaatcattgtgtgacagcatttggaaagaggttgctgaaaacatgg
ctagcaagaccattataccatttggaatcaattaaagatcgccaggatgctgtagcaggt
ctgcggggggtaaatcaacctatgatgcttgaatttcaaaaggtgttgtccaggcttcca
gacattgagcggctgcttgcacgcatattttctaccagcgaagccaatggaagaaatgca
aataaagtagttttatatgaggatgcagcaaagaagcagcttcaggagtttatatccgct
ctacgtggctgtgaattagtggcccaagcatgttcttcgcttgctgtcattttggaaaat
gtggagtccggacagttgcatcatttattaacacctggtaaaggtcttcctgacatcctt
ccaattcttaaacattttaagagtgcctttgattgggtagaagccaacaattctggacgt
ataatacctcatgaaggtgtcgatgtagagtttgactctgcttgtgaaaaagttaaagag
gttgaatctagtttggctagacacctgaaggaacaacagaaattactaggggacaaatca
attacttatgtcacagttggaaaagaggcatacctgttagaagttcctgaacatctgcgt
ggtagtattcctcaagattatgagctgcgttcatccaaaaagggcttctacaggtattgg
actccaagtattaagaagttcttaggagagctctcacaggctgaatctgaaaaggagtcg
gcgttgaagagcattttgcagaggttaattgtgtgtttttgcaagtaccatgacaagtgg
agacagttagtttctgcaactgcaggcaggggctcccactcctttttgggacggaaccat
tgtcatggtatgatttcaattcatttttctcgactgaaactggtcactcatgatgcagaa
ctggatgttttgatcagtctggcaattgctagtgacttttatgaaggacctgcatgttgt
ccaaccatcgtaggttcatcattgtcaagtcaagtgccatgcctttctgcaaaaaaatta
ggacaccctgttctcaggagcgattctttgggaaagggtgcatttgtcccaaatgacatt
agtattgggggttctggtcgtgccagctttatccttctcactggtcctaacatgggtgga
aaatctactcttcttcggcaagtttgtttggctgtgattctggcccagattggagctgat
gtccctgctgaaagctttgagttgtctcctgttgaccgcatctttgtcagaatgggtgca
aaagatcatattatggcaggccagagtacatttttgacagagctctcagaaactgcattg
atgctgtcatcggcaacctgtaattcattggtggcgttggatgaacttggacgtggcaca
tcaacttcagatggacaagcaatagccgaatcagttcttgaacattttgtccacaaggta
cagtgtcgaggaatgttttcaactcactatcaccgattagctgtagattatcaaaaagat
tcaaaggtctcactgtaccatatgtcatgtcaagttggaaatggagttggagtggaagaa
gttacatttctttataggttgagacctggtgcctgccctaagagttatggtgtcaatgtt
gcaagactggctggacttccagactcgatacttcataatgctgctgccaagtctagggaa
tttgaggctgtatatggtcgacacagaaagggatctgaaggaaagttggccattcaaagt
tgtgacaagatggcagtattaatccgaagtttgatcaatgccacaacaagcttgagtggc
cataagtctgctgggatcgatatcagctcagtgaccaaacttcaggataaagctaggata
tttttgcagtaa
DBGET
integrated database retrieval system
