Populus trichocarpa (black cottonwood): 127903891
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Entry
127903891 CDS
T01077
Name
(RefSeq) flowering time control protein FY-like isoform X1
KO
K15542
polyadenylation factor subunit 2
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127903891
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
127903891
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
127903891
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
ANAPC4_WD40
eIF2A
NBCH_WD40
WD40_like
PROPPIN
WDR54
Motif
Other DBs
NCBI-GeneID:
127903891
NCBI-ProteinID:
XP_052305762
LinkDB
All DBs
Position
Unknown
AA seq
750 aa
AA seq
DB search
MNYGDPQQQQPQHQHQQPLQQHQHQQPQHQHQQPQHHHHQHMQQQPPPGGDFHRGQPPPM
MRQPSASSTTLNPLDYHHHPQAAPGPPPPKYEANHGDGYGGKRMRKLTQRRAVDYTSTVV
RYIQTRMWQWDLRDRTVLQHTPAAAIDVLPPVAYSDNPSTSFATKFVHTSLNKNRCSINR
VLWTPNGKRLITGSQSGEFTLWNGQSFNFEMILQAHDQAIRSMVWSHNDNWMVSGDDGGS
IKYWQSNMNNVKVNKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCHEERSLTGH
GWDVKSVDWHPSKSLLVSGGKDNLVKLWDAKSGRELCSFHGHKNTVLCVKWNQNGNWVLT
ASKDQIIKLYDLRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSYDGSIFHWLVGHETP
QVEVSSAHDNSVWDLSWHPIGYLLCSGSNDHTTKFWCQNRPGDTARDKFNVGQNQGYGEQ
NPALGGRFPGNFHVPEPPITPGPFAPGLTRNEGTIPGVGAAMPLSITSLDASQGEQRQPL
PVSMPFGGPPLPPGPHPSFRAANQQQGYQQSPQQQQQQQPLPQHMPPLPMPPPNMQQLLP
PSHVPLLSHPHLPRPPQMPPHGMPSPIPSSMPGSLPSSMPGPMGMQGTMSQMVPLLPQGH
FMGMNPMHSGSLPTSAAPPVGGGFPNGLPNMQGQSNATGGQMYPQGGPFNHPQGGQMPRM
PGFNPYQSGNQSGMPPPLPPGLPPHSQTPQ
NT seq
2253 nt
NT seq
+upstream
nt +downstream
nt
atgaattacggtgatcctcaacaacagcagccacagcaccagcaccagcagccactacaa
caacaccagcaccagcagccacagcaccagcaccagcagccacaacaccaccaccaccaa
catatgcaacagcaaccgcctcctggtggtgattttcatagagggcagccaccgccaatg
atgcgacaaccctccgcttcatcaaccactcttaacccgcttgattaccaccaccatccg
caggccgcccccggtcctcctcctcctaaatacgaagctaatcatggtgatggttacggt
ggaaaaaggatgaggaagcttacgcagaggagagcagttgattatacaagcacggttgtt
aggtatattcagactcgtatgtggcagtgggacttgagggacaggacagtattgcaacat
accccagcagctgcgatcgatgtgttgcctccagttgcctattctgataatccatcaaca
agctttgccacaaagtttgttcatacatctctaaacaaaaaccgttgttcgataaatcgg
gttttgtggactccaaatgggaaacgtctaatcacaggttctcaaagtggggaattcacc
ctttggaatggacagtcatttaattttgaaatgattcttcaggctcatgatcaagcaatc
aggtctatggtatggagccacaatgacaattggatggtctctggtgatgatggtggttca
attaagtattggcagagcaacatgaataatgttaaggtcaataaatctgctcataaagaa
tcagtgcgtgacttaagtttctgcaggacagatttgaagttctgttcatgctccgatgat
actactgttaaagtttgggactttgctcggtgccatgaagagcgttcattaacgggccat
ggttgggatgtgaagagtgttgattggcacccttcaaaatctcttctggtctcaggtggg
aaagacaacctagtaaaactctgggatgctaaatctggaagagagctttgctcatttcat
ggccacaaaaataccgttctttgtgtcaaatggaaccaaaatggtaactgggtgctgact
gcttcaaaagatcaaatcatcaagctttatgatttaagggcaatgaaggagcttgaatct
ttccgcggacatcggaaggacgtgactgcattggcttggcatccattccatgaagagtac
tttgttagtgggagttatgacggatccattttccattggcttgtggggcatgaaaccccc
caggttgaagtttccagtgctcatgataatagtgtttgggatctttcatggcatcctatt
ggatatcttctttgcagtggtagcaatgatcacacaacaaagttttggtgtcaaaatagg
ccaggagacactgcccgtgataaatttaacgtgggtcaaaaccaaggttatggtgagcaa
aatcctgcccttggtggccgcttccctggcaatttccatgtacctgaaccaccgataact
ccaggaccatttgctcctggactgactcgaaatgaaggaactattccaggtgttggagct
gcaatgccactatcaattacatctcttgatgcatcgcagggagagcagaggcagcctctt
cctgtttctatgccctttggagggcctcctcttcctcctggtccacatccgtcatttcgt
gcagccaatcagcagcagggatatcagcaaagtcctcagcagcagcagcaacagcaacca
ctccctcagcacatgcctcctttgcctatgccgcctccaaacatgcaacagctactgcct
ccatcccatgtacccctgctttctcatccccatctacctcgccctcctcaaatgcctcct
catggcatgccttcaccaatcccatcttcaatgcccggatctttgccttcatcaatgcct
ggtccaatggggatgcaagggacgatgagtcagatggtacctctgttgccacagggccat
tttatgggcatgaatccaatgcactcaggatccttgcccacaagtgctgcccctccagtc
ggcgggggctttccaaatggcctgcccaatatgcagggccaatcaaatgccacagggggg
caaatgtatccacagggcggtccattcaaccatcctcaaggtggacagatgccaaggatg
cctgggtttaatccttaccagtctggaaaccaatctggtatgcctccaccactaccacct
ggtctcccaccacattcccagacacctcagtag
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integrated database retrieval system
