Populus trichocarpa (black cottonwood): 18094701
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Entry
18094701 CDS
T01077
Name
(RefSeq) protein PHYTOCHROME-DEPENDENT LATE-FLOWERING
Organism
pop
Populus trichocarpa (black cottonwood)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
PHL
Spt20_SEP
LCD1
Motif
Other DBs
NCBI-GeneID:
18094701
NCBI-ProteinID:
XP_006369116
UniProt:
U5GQ61
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Position
1:complement(14099014..14107013)
Genome browser
AA seq
1341 aa
AA seq
DB search
MGVSFKVSKTGTRFRPKPVFQSDTVPDEVSENFKESSVIGSKNESSTRKRQGDIVAGALD
VLDVSSSSLSEHEVSFTLNLYPDGYSIAKPPEIKAAHQAPLQDGQKLLHPYDKASETLFS
AIESGRLPGDILDDIPCKYVNGTLVCEVQDYRKCASKQGSSIPSMDGLPIVNKVRLTMSL
ENVVKDIPMISDNSWTYGDLMEVESRILKALQPQLCLDPTPKLDRLCNNPISTKLNLDLS
SFHRKRLRQTPEVTVTSNNRIHGKNVFINRVSESSNSRFGDSGIISGNVIPQHVQENQST
QNLGPNNMLTLRARSFVPDGNVPGLTLVPQQQRYQIGISPRSMQDQGSSLINVSGASPSR
QDMIVAYTNIINPGGSLHGKRENQDAQSSPLSSFNKRARLTPAGPDGIQQQQMGLHMDSL
HESEMNWKNSLLQQQAMTRGIQYANSGIQKYPHQMLEGVVHPNAAATSFSAGQPGMRLGL
KEEQLETEKPDVLGQGKNDRQMMEAEAGHLDTQQLQVQQRLPQHLMRSNFPQGGWNNLSQ
DCRKEEPHQKRKLAQSPRLSTGLAHSPLSSKSGELSSGSAGPHFGATVALGSSQREKSMA
TAPSLTSSANDPLQRQHQAQVAAKRRSNSLPKTPIMSNVGSPASVSNISVPLNANSPSIG
TPPMADQSMLERFAKIEIVTMRHQLNCKKNKVDDYSITKPNTYSLQNLSEHLSNSANNEE
FKDDSNARQLSKSLAGGNMNICKTRFMDFVLPERVLQGNAISYVTKVRNRMIMSEKPNDG
TVVMHYGEADEKPVDVLSAEDYLPTLPNTHFADLLATQFCSLMTREGYLVEYHIQPRPVC
INIASSSQPNVSGGPLNNSAIEVKQYNEAVSVQSLNDIKPTLGGNASINSSHNLLANSRM
LPPGNPQALQISQSLVSGVSMPARLQQLDPQHSLLQQHQQHQQQQQQQQQQLQQQNQHAL
IQQQNSQFQRSPMVLPSNPLSDLGAIGANSNMQLGSHMVNKPSTLQLQQQLLQQQQQLQQ
LQQGQQQQGQQQSQQPLQQQQGPQMQQRKMMMAMGMGSMGNNMVGLGGLGNAMSIGGARG
IGPGISGPMAPITGMSNASQNPINLGHTQNINALNQQLRTGHMMPAAAQMVKQRINRASV
LGGAQSGIAGMSGARQMHPGSAGFSMLGQPLNRTNMNVIQRSPMGHMGPPKMMAGMNHYM
QQQQLQQQQQQLQQQQQPQLQQLQQQLQPQQHQQLLLQQQQETSSLQAVVAPSQVGSPST
MGIPLLNQQTQQQPSPQQMSQRTPMSPQLSSGAIHAISSGNPEAGPASPQLSSQTLGSVG
SITNSPMELQAVNKRNSVSNA
NT seq
4026 nt
NT seq
+upstream
nt +downstream
nt
atgggggtctcttttaaggtctcaaaaactggtactaggttccgtccaaagcctgttttt
caatcagatactgttcctgatgaagtctcagagaatttcaaagagagctcggtgattggc
tcaaagaatgaatcctctacgagaaagcgccagggtgacattgttgcgggtgctttggat
gtgttagatgtctcaagttcatctctctctgagcatgaagtttcattcacattgaacctc
tatccagatggatattctatagcaaaacccccagagattaaggctgcacatcaggctcca
cttcaagatggtcagaagttgttgcatccatatgataaggcttctgaaacactcttttcg
gcaattgaatctggccggttacctggagatattctggatgatattccatgtaaatatgtt
aatggaacacttgtgtgtgaggtgcaagattatcggaaatgtgcttccaagcaggggtct
agcattccatctatggatgggctccctattgtcaataaagtacgccttacgatgtcattg
gagaatgtagtgaaggatatcccgatgatctctgataattcttggacgtatggtgatttg
atggaagtagaatcccgcatattgaaagcattgcaaccacagctttgtctagatcctact
cccaaattggataggctctgtaataacccaatttcgaccaagctcaatttagatctgagc
agtttccacagaaaaagattaaggcagacacctgaggttactgtcacatctaataacaga
atccatggaaagaacgttttcatcaatcgtgtgtctgaaagctctaacagtaggtttgga
gattctggaatcatttcaggaaatgtgataccacagcatgtccaggagaaccagtctact
caaaaccttggccctaacaacatgttaaccttaagagcaagaagctttgttccggatggc
aatgttcctggactaactttggtaccccagcagcagaggtatcaaattgggatttcccca
agaagtatgcaggatcaagggtcgtctctcattaatgtttcaggagcttccccttccagg
caggacatgattgttgcttacaccaacatcattaatcctggtggttctcttcatgggaaa
agggagaaccaagatgcccaatcatcgcctttatctagttttaataagagagcaaggctt
acaccagcaggtcctgatggaattcaacagcagcaaatggggctgcatatggacagcctc
catgaatccgaaatgaactggaagaattcattactacagcagcaagcaatgacaagagga
attcagtatgctaattcaggcattcagaagtatcctcaccagatgttagaaggggttgtg
catccaaatgctgcagcaacatcattttctgcaggacagccaggtatgagacttggtctc
aaggaagaacagttagagacagaaaaaccggatgtgcttggtcagggtaaaaatgatagg
cagatgatggaagcagaagcaggccatttggacacacagcaactacaggtacaacaaaga
ttaccacaacatctcatgagatctaatttccctcagggtggatggaacaatctcagtcaa
gattgtaggaaggaggaaccacaccaaaagaggaaattggctcaaagtccccggttatca
actgggttagctcattcgcctctatcatcaaaatctggtgaattgtccagtggttcagct
ggaccccattttggagcaactgttgcacttgggtcatcacaaagggagaagtcaatggct
actgccccatctttgacttccagtgctaatgatcccttgcaaaggcagcaccaggctcag
gttgctgcaaaacggagatcgaattcccttcccaagaccccaataatgagcaatgtgggg
tctcctgcaagtgttagcaatataagtgttccattaaatgcaaatagtccttcaattggg
accccaccaatggctgatcaaagcatgcttgaaagatttgcgaagattgagatagtgaca
atgaggcatcaactcaactgcaaaaagaataaagttgatgattactctatcacaaaacca
aacacctattcacttcaaaatctgtctgaacatctctccaattcagctaataatgaggag
ttcaaagatgatagtaatgcaaggcagttatcaaagtctcttgcaggtggcaatatgaat
atctgcaagacgagatttatggatttcgtgctgccagaacgagtgcttcaagggaatgct
atttcttatgttacaaaagtacggaatagaatgattatgtcagagaagccaaatgatggt
actgtggtgatgcattatggagaagcagatgagaagccagttgatgttctatctgcagaa
gattatcttcccacgttgcccaatactcattttgcggatttgcttgcaacacaattttgt
tcactgatgacgcgggaaggatatcttgtggaatatcatattcaaccgagacctgtctgt
attaatattgcttcaagcagtcaaccaaatgtttctggaggccctcttaataattctgct
attgaggtgaagcaatacaatgaagcagtttcagttcagtcattgaatgatataaaacct
actcttggtggcaatgcgtctattaattcgtctcacaatctactagcaaattcaaggatg
ctgcctcctggaaatcctcaggccttacagatctcccaaagtcttgtgtctggggtttca
atgcctgcaagactacaacaactagatccacagcattctcttctgcagcagcatcaacag
catcaacagcagcaacagcaacagcaacagcagctgcagcaacaaaatcaacatgcctta
attcaacagcaaaattcacagtttcagaggtcaccaatggtgcttccatcaaatccactc
tctgatttaggtgcaattggagcaaattcaaatatgcagttgggtagtcacatggtaaac
aagccttctactcttcagctgcagcagcagctgctgcagcagcagcagcaactgcagcag
ctgcagcaggggcagcagcagcaggggcagcagcagtcgcagcagccgttgcagcagcag
caggggccacagatgcagcagaggaaaatgatgatggctatgggtatgggaagcatgggg
aataacatggttggtctaggaggtctgggtaatgccatgagcattggaggtgcgagggga
ataggccctggaatctctggacctatggctcctataactggaatgagtaatgccagccag
aacccgataaatctgggccatactcaaaatatcaatgcattaaatcagcaacttcgtact
ggacacatgatgcctgcagctgctcagatggtgaaacaaagaatcaatcgagcgagtgtg
ctagggggggctcagtctggcatagctgggatgtcaggagccaggcagatgcacccaggc
tctgctggtttttccatgcttggccaacctctgaaccgaaccaacatgaatgtaatacaa
cgaagtccaatggggcatatgggtccaccaaagatgatggcagggatgaatcactatatg
cagcagcagcaattacagcagcagcaacaacaattacagcagcagcagcagccacaatta
caacaactgcaacaacaattacagccacagcaacatcaacagctgctactgcagcagcag
caagaaacttcatcgctacaggctgttgttgctccttcacaagtggggtcaccgtcaacc
atgggaattccactactgaaccaacaaacccagcagcagcccagcccacagcaaatgagc
cagcgaaccccaatgagcccacagttgagttcaggagcaatccatgccatcagttctggt
aatccagaggctggtcccgccagtccacagttgagctctcaaacccttggttctgttgga
agcatcacaaattctccaatggaactccaagctgtgaacaaacgcaactctgttagcaat
gcatga
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