Populus trichocarpa (black cottonwood): 18094867
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Entry
18094867 CDS
T01077
Name
(RefSeq) zinc finger BED domain-containing protein DAYSLEEPER isoform X1
Organism
pop
Populus trichocarpa (black cottonwood)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
hAT-like_RNase-H
Dimer_Tnp_hAT
Flagellin_N
DUF6116
Motif
Other DBs
NCBI-GeneID:
18094867
NCBI-ProteinID:
XP_006369308
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Position
1:complement(20166287..20171200)
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AA seq
1109 aa
AA seq
DB search
MEVEDPMSPIMAITPVTPTDNNEPPTSEEQPSKRRRKKSIVWEHFTIETVGAGCMRACCK
QCKKSFAYITGSKLAGTSHLKRHIALGICPVSRQKNESSPYTPGSKTDPPKKRFRASPGF
SGIPLDQDRCNHEIAKMIIQHDYPLHIVEHPGFIDFVRTLQPHYNMVSFNTIQGECVDVY
LREKQRLLNLISGIPGRVNLTLDFGISNLDIGYAFLTGHFIDGDWNLQRRILNVATLPFY
DSDYAFNQAVVSCLSDWHLRSKLFTLTLDQSFSNENVIGNLRGLLSVKNPFVLHGQLLKG
SCYARVLSHLAQEALSATGEIVRRIRESVKYVKTSEAHDEKFTELRQQLQVPSTKILIID
NQTKWNTTYHMLVAASELKEVFACLDTSDPVYKINPSTDDWKKADILCTYLKLLYDAANI
LTGPTYPPAHVFYHEVYKIQLELTHATMSQDPFVSNLIKPMKEKFDQYWKDCFLVLAIAV
VMDPRFKMKLLEFSFPKVFGEDAGMWIKSVDDGIHELFLDYLAPNIHLPAAYVEEGHISL
TQSDTLQEVEAAPAPDGYSQELHPHVPLQVAHPDKSNPQEVPLQDGHHQEVSPQESLLQE
VPLQALTPQEMHVEEVPSQEVSIHEMHTEVSSQEPPSQEMHAQDITPQESHTEEAPSQEM
QSDDASQVPPQDINTEEVNPQDTHAEEVPSHEVPVQEIHPNEVPSQEVSVQEMQAEEAPA
QAMQTEEAPLQEMHSEEAPPEEMHSEEAPPEEMRTEEAPLEEMCTEEAPPEEMWTEEAPP
QEIRTEEAPPQEMQMEEAPPQEMHIEEAPPQEMCREEAPPQEMHTEEAHTEEAPPQEMRT
EEAPPQEMQTEEAPPQEMRTEEAPPQEMHAEEAPPQEMHAEEAPPQEMHAEEAPPLEMRA
EEAPPLEMHTEEAPPQEMRTEEALPQEMHAEEAPPQEMRTEEALPQEMHTEEVPPQEMQL
QVIHQEMQPLELHTQDLPMLSIGDGLSDFDIYISEITSGQHLKSELDQYLEESLLPRVHE
FDVVGWWKLNRLKYPTLSKMAADILSIPVSTVAPDSVFDTENRKIDSYRGSLLPITLEAL
VCAKDWLQHGSSLSSSSLEISNALVKKEF
NT seq
3330 nt
NT seq
+upstream
nt +downstream
nt
atggaagtagaagaccccatgagtcccattatggcaattacccctgtgactccaacagat
aacaatgaaccacccacttctgaggaacagcctagtaaacgtaggagaaagaagtctatt
gtctgggaacacttcacaattgaaactgttggagctggttgtatgagagcgtgctgtaaa
cagtgcaagaaatcatttgcatatataactggttcaaagcttgcaggaaccagtcacctc
aagcgacatattgccctggggatctgccctgtaagccgtcagaaaaatgaatcatcacca
tatacaccaggctcgaaaacagaccctcctaaaaaacgtttccgagcatctcctggattc
tcaggcattcccttggatcaggaccgctgcaaccatgagatagctaagatgatcattcag
catgattatccactccacatagtggaacacccgggtttcattgattttgtccggactctt
caacctcattacaatatggtgagtttcaacaccattcaaggggaatgtgtggacgtgtac
ctgagggagaagcaaaggcttttgaatcttatcagtggaattcctggacgagtcaacctt
acgttggattttgggatttcaaatctagatattggatatgctttcttaacaggtcacttc
attgatggtgattggaatttacagcgacgaatccttaatgttgccacgttacctttctat
gattctgattatgccttcaaccaagcagttgtgtcttgcctatctgattggcatttgagg
agcaagttatttactctcactcttgatcaatccttctcaaatgagaatgtaattggaaat
ctaagaggacttctttctgtcaagaacccatttgtgctccatggtcagttactgaaaggg
agttgctatgctcgagtgttaagtcatcttgcacaagaagcactcagtgccacaggggag
attgttaggagaatccgtgaaagtgtgaaatatgtgaaaacctcagaagctcatgatgag
aagtttactgaactcaggcaacaacttcaagtccctagcacgaaaatcctcattattgac
aatcaaactaaatggaacacaacttaccacatgctggtggctgccagtgaattaaaggaa
gtgtttgcgtgcttagatacctctgatcctgtttacaagataaacccatcaactgatgat
tggaagaaggcggatattctctgcacatacttgaagcttttgtatgatgcagctaacatt
ttgacaggcccaacatacccacctgcccatgtattttaccatgaagtttacaaaatccag
ttagagctgacacatgcaaccatgagccaagacccctttgtcagtaacctgatcaaaccc
atgaaagaaaagtttgatcaatattggaaggattgcttccttgttttggcaattgcagtg
gtcatggatccaaggtttaagatgaagcttctagaatttagcttcccaaaggtctttggt
gaggatgctggtatgtggatcaagagtgttgatgatggcattcatgaactctttctagac
tatcttgctcccaatattcatctaccagcagcatatgtggaagaagggcatattagcctt
actcaatcagacacccttcaagaagtcgaagcagcacctgctccagatggatattcccaa
gaactgcaccctcatgtacctcttcaagtggcacaccctgacaaatcaaatcctcaagaa
gtgcctcttcaagatggccaccatcaggaggtatctcctcaggagtcactcctccaagaa
gtgcccttacaggcattaacccctcaagagatgcacgtggaagaagtgccttcccaagaa
gtatccattcatgagatgcacactgaagtgtcctcccaggaaccgccctctcaagaaatg
catgctcaagatataacacctcaagaatcacacacggaagaagcaccttctcaagagatg
cagagtgatgatgcctctcaagtaccccctcaagatattaacactgaagaagtaaacccc
caagatactcatgctgaagaagttccctcccatgaagtacctgttcaagagattcaccct
aatgaagttccctcccaagaggtatctgttcaagagatgcaggcagaagaagcgccagct
caagcaatgcagacagaagaagctccactgcaagagatgcactcagaagaagccccacct
gaagagatgcactcagaagaagccccacctgaagagatgcgcacagaagaagccccactg
gaagagatgtgcactgaagaagcgccgccggaagagatgtggacagaagaagcgccgcct
caagagatacgcacagaagaagcgccgcctcaagagatgcagatggaggaagcgccgcct
caagagatgcatatcgaggaagcaccgcctcaagagatgtgcagagaggaagcaccgcct
caagagatgcataccgaggaagcgcataccgaggaagcgccgcctcaagagatgcgcacc
gaggaagcgccgcctcaagagatgcagaccgaggaagcgccgcctcaagagatgcgtaca
gaggaagcaccgcctcaagagatgcatgccgaggaagcaccgcctcaagagatgcatgcc
gaggaagcaccgcctcaagagatgcatgccgaggaagcaccaccgctagagatgcgcgcc
gaggaagcaccaccgctagagatgcataccgaggaagcaccgcctcaagagatgcgcaca
gaggaagcactgcctcaagagatgcatgccgaggaagcaccgccgcaagagatgcgcaca
gaggaagcactgcctcaagagatgcataccgaggaagtgccgcctcaagagatgcaactc
caagtaatccatcaagagatgcagcctctagaattgcacactcaagatctacctatgctt
tctattggagatgggctttcagattttgatatatatatttctgagattacaagtgggcaa
catttgaagtcggaattggatcagtatctagaggagtctcttcttcctcgtgtgcatgag
tttgatgtagtaggttggtggaaactaaacaggctaaagtacccaacactttcgaagatg
gctgctgatattttatcaataccagtatctactgttgctcctgattctgtgttcgacact
gaaaacagaaagatagatagctataggggttcactacttcctataacacttgaagccctt
gtatgcgccaaggattggctccagcatggatcatcgttgtcatcatcatcactggagatt
tctaacgcacttgtgaagaaagaattttag
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