Populus trichocarpa (black cottonwood): 18096542
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Entry
18096542 CDS
T01077
Name
(RefSeq) LOW QUALITY PROTEIN: protein transport protein SEC23
KO
K14006
protein transport protein SEC23
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
18096542
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pop04131
]
18096542
Membrane trafficking [BR:
pop04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Coat protein complex II (COP-II)
18096542
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec23_trunk
Sec23_helical
Sec23_BS
zf-Sec23_Sec24
Gelsolin
Vps36-NZF-N
Motif
Other DBs
NCBI-GeneID:
18096542
NCBI-ProteinID:
XP_024451772
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All DBs
Position
2:complement(23089557..23104780)
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AA seq
760 aa
AA seq
DB search
MGEFVELEAQDGVRMPWNVLPGTKQESSNCVVPVSVIYTPIKPFPNMPVLPYSPLRCRNC
RSVLNPFCTVDFFAKLWICPFCFQRNQFPPHYTAISDDNLPAELFSQYTTIEYEEPQMIS
SSSXIMFVVDTCMIKEEMAFLKSALSQAIELLPDNSLVGLITFGTLVHVHELGFGETPKT
FVFKGSKDVSKDQLLEQMGFFLKKPKPPTSVIAGAKDGLSSDSISRFLLPASQCEFTLNS
VLEELQKDPWPVPPHQRASRCTGTALSVAACLLGACVPDSGARIMAFIGGPSTEGLGSIV
SKNLSEPIRSHKDIDKDSANHYHKAVKFYERLAKQLVHQGHVLNLFACALDQVGVAELKV
AIERTGGLVVLAESFGHLVFKDSLRRVLQLGDYDLGLSSNGIFEVNCSKDIRVQGIIGPC
ASLEKKGPLCSDTVVGQGTTSAWKMCGLDKATTLCLIFEIAKKDSTDTTVQPSSYQFYFQ
LLTYYQHSGGQMRLRVTTLSRRWVAGLGSAQDLIAGFDQEAAAVAMARLVSFKMENEVEF
DPIRWLDKALIHLCARFGDYQKGSSSSFSLSSRLSIFPQFMFHLRRSQFVQVFNNSPDET
AYFRVILNRENVANSVVMIQPSLISYSFHSGPEPALLDVAAIAADRILLLDSYFTIVIFD
GATIAQWRKAGYHNQPEHQAFAQLLQAPRDDTDEIIKERFPVPRLVICDQHGSQARFLLA
KLNPSASYNSDSPLPGGDVLFIDDASFEAFLDHLQRLVVQ
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgggggaatttgtggagctggaagctcaggacggcgtgagaatgccttggaacgtgttg
ccgggcaccaagcaagaatcaagcaactgtgtggtacctgtgtccgtcatttacactccg
atcaagcccttcccaaacatgcccgttctcccatattctccactacgttgccgaaactgt
cgctccgtcctcaatccattctgcaccgtcgatttctttgccaagctttggatctgcccc
ttctgctttcaacggaaccagtttccccctcactataccgccatctctgacgacaacctc
cctgccgagcttttctctcagtatacgaccatcgagtacgaggaacctcagatgatctca
tcctcctctnccatcatgttcgtggtggacacttgcatgatcaaggaggagatggccttc
ctcaagtctgccctgtcccaggccatcgaactcctccctgataactccttggtgggcctc
attacctttggtactcttgtccacgttcacgagcttggctttggtgaaacccctaagacc
ttcgttttcaagggctccaaggacgtctccaaggaccagcttctcgagcagatgggcttc
tttctcaagaagcccaagccccccactagtgtcattgccggcgccaaggatggcctctct
tccgatagcatttcccgcttcctcttgcctgcctcccaatgcgaatttacactcaattct
gtcctggaggagctgcagaaagatccttggccggtcccaccccatcagcgggctagcagg
tgcaccggcactgcactcagtgtggctgcttgtttgttaggagcttgtgttcctgattct
ggtgctagaattatggctttcattggtggtccatccactgaaggacttggttctattgtg
tcaaagaatctctccgaaccaattcgttctcacaaggacatcgataaggactctgctaat
cattatcataaagctgtcaagttctacgagagacttgctaagcagcttgtacatcaaggt
catgtgctcaatctgtttgcttgtgccctagaccaggtgggggttgctgaacttaaagtt
gcaattgaaagaactggtgggcttgtcgtgcttgcagaaagctttggccatttagtcttt
aaggattctctgagacgcgttctccagttgggtgattatgatcttggactatcatcaaat
ggtatatttgaggtaaactgctcgaaggatatcagagttcaaggcattattggtccttgt
gcatcgcttgaaaagaaaggtcctttgtgctctgacacagttgtaggccagggaactaca
agtgcatggaagatgtgtggcctggacaaagctacaactttatgtctaatatttgaaatt
gcaaagaaggacagcacagatactactgttcaaccctcaagctatcaattctacttccaa
ttgctgacttactatcagcatagtggtggtcaaatgaggcttcgcgtaacaaccctctca
agaagatgggttgctggacttggaagtgctcaggacttgattgctggattcgaccaagaa
gcagctgctgtagctatggcacgcctagtgtctttcaaaatggaaaatgaggttgagttt
gaccccataagatggctagacaaagctttgatacatctatgtgctcgatttggagactat
cagaagggtagttcatcttctttcagcctatcttcacggctttcaatatttcctcaattt
atgtttcatttacgacgttctcagtttgtccaggtcttcaacaacagcccagatgagaca
gcatactttagagttatactgaatcgtgaaaatgttgccaattcagttgtgatgatacag
ccttcattgatttcttattcgtttcattcaggaccggaaccagcacttcttgatgttgct
gccattgcagctgatagaattctgcttctagactcttatttcactattgtcatttttgat
ggggcaacaattgctcaatggcggaaagctggatatcataatcaacctgaacatcaggca
tttgcccagctgctgcaagctcctcgagatgacacagatgaaataatcaaggaaaggttt
ccagttcctcgcttggtcatttgtgatcagcatggttcacaggcccgttttcttctggca
aaattgaacccttctgcttcatacaactccgattctcctcttcccggtggagatgtcttg
tttatcgatgacgcgagctttgaggccttcttggatcatcttcaaagactagtagttcaa
tga
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