KEGG   Populus trichocarpa (black cottonwood): 18097958
Entry
18097958          CDS       T01077                                 
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A-like
  KO
K02324  DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03030  DNA replication
pop03410  Base excision repair
pop03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    18097958
   03410 Base excision repair
    18097958
   03420 Nucleotide excision repair
    18097958
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pop03032]
    18097958
   03400 DNA repair and recombination proteins [BR:pop03400]
    18097958
Enzymes [BR:pop01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     18097958
DNA replication proteins [BR:pop03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase epsilon complex
    18097958
DNA repair and recombination proteins [BR:pop03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase epsilon complex
      18097958
SSDB
Motif
Pfam: DUF1744 DNA_pol_B_exo1 DNA_pol_B DNA_pol_B_exo2 RNase_H_2
Other DBs
NCBI-GeneID: 18097958
NCBI-ProteinID: XP_006384633
LinkDB
Position
4:complement(19904330..19928960)
AA seq 2221 aa
MNGESRRWDRKDLRRSSKKQKLMRTAEEELESKLGFDLFTEGDKRLGWLLTFSSSSLDDE
ETGRVYSCVDLYFVSQDGSAFKSKYKFRPYFYAATKEKMEMDVEGYLRRRYESQIAYIEI
VEKEDLDLKNHLSGLHKSYLKISFATVQQLMDVKRDLLHVVERNQAKSDAAEAYESILTG
KREQRPQDFLDCIIDLREYDVPYHVRFAIDNDIRCGQWYDVSVSSTGVKLEKRTDLLQRA
EVHVCAFDIETTKLPLKFPDADYDLIMMISYMVDGQGYLITNRECVGEDIEDLEYTPKPE
YEGCFKVTNVKNEVELLKQWFAHMREVKPGIYVTYNGDYFDWPFLESRAAYHGFKMGDEV
GFSCDKNQGECRAKFACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVR
FAKEKPQMMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLM
VQAYMANVICPNKHQSDQDKFYKSHLLESETYIGGHVECLESGVFRSDLPTSFKLDPSAY
ELLIKNLDRDLQYAIRVEGKMDLDLISNYDEVKNVIMEKLVCLRDEPVREECPLIYHLDV
AAMYPNIILTNRLQPPSIVTDEICTACDFNRPDKTCLRKLEWVWRGEIFMAKKSDYYHLK
KQIESEFVDGTDGQFSKSFLDLSKMDQQSKLKERLKKYCQKAYKRVLDKPVTEVREAGIC
MRENSFYVDTVRSFRDRRYEYKGLNKVWKGKLSEAKASGNSIKIQEAHDMVVLYDSLQLA
HKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLVDKIGKPLELDTDGIWCV
LPGCFPENFTFKTKDSKKKLTISYPCVMLNVDVARNNTNEQYQTLVDPVNKTYATHSECS
IEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAE
LFDKFLHGSTLEECYSAVAAVANRWLDLLDNQGKDIADSELLDYISESSTMSKSLSDYGQ
QKSCAVTTARRLADFLGDTMVKDKGLRCQYIVACEPRGTPVSERAVPVAIFETDPEIMKF
YLRKWCKTSSDVGIRSIIDWSYYKQRLGSAIQKIVTIPAAMQKVANPVPRVVHPDWLHRK
VREKEDKFRQRKLVDIFNLRSRDDLSRKMDDATIKNHDEANVKDLEDFQIKSSSINRPRP
IVRCYDVNEKRSAKKTGQLNSAEQQTDSVHELSSQPQHNTSYAENIDRNVDYQGWLELKK
RKWKDILDRRKKQRLSNTRTSHHITDASELLGGLTNHKGAQRRTGVGSYFTTHEVALTRC
HWQIIQLLPSSRCGQFFAWVVVEGIMLKIPITIPRAFYLNAKAPAMENFPGRRVTKTLPH
GRPSYNLVEVIIDEDKFRKESKKLAALLADPEVEGIYESKVPLEFNAVIQIGCVCKVDKT
AKKRNAQDGWSLSELHMKTTTECSYLEQSISFFYIYHSISEGRAIYVIYLPALGTVSVVV
VNPYQNKDITPSFLERQFREACQALSIEAIPPRNSIVFKVDYVGHVKDAEKILQGTISEL
RDKHHGPTLAVIECPNAHLMKSGVPALDDFPCVSIPSNARDSQYQVLGWQQASAKIGMQR
SAASSQWLNERISLSRYAHVPLGNFELDWLIFTADVFFSRALHDQQQVLWISDDGVPDLG
GNHEESTCFADEVQQPVLTYPGAYRKVSVELKIHHLAVDALLKSNQINEMEGGALLGFDQ
DMNSSTTLYDQSGFDEATSSASGLRVLKQLIQRCLADAVTSGNVFADAILQHLYRWLCSP
QSKLHDPALHRILHKVMQKVFALLLAELRKLGATIIFANFSKVIIDTGKFELTAAKAYCD
SVLKTLQNRELFEWIELEPLQFWHSLLFMDQYNYGGIPARPDDSSHNDLHHHSPREEPKV
DIVSNWNIAEYLPKKIQDHFVLIVSEFMFIPWDYAQKQAATREALRDGNSCTPSITIVAA
ENFESHMVEYIKGQIGTHFTDKLLGIARDTVLHMKGINKSENGQQISLGIQQPAGMNHKG
DPALEFIKHVCAVLALDQHVQHEVLVMRKNLLKYVRVREFAPEAEFHDPCPSFILPNVIC
SYCNDCRDLDLCRDSAVLAEEWRCAVPQCGQPYDREVMENALLQIVRQRERLYHLQDLVC
LRCNQVKAAHLSEQCACAGSYRCREDVSEFRRKMQIFLNVAIRQKFQLLQECTSWILEVI
L
NT seq 6666 nt   +upstreamnt  +downstreamnt
atgaacggcgagagccggagatgggaccgcaaggacctacggcggagctcgaagaagcaa
aagctgatgcgcaccgccgaagaagagttggagtccaagctcggctttgatctcttcacc
gaaggtgataaacgtctcggttggctcctcactttctcttcctcttctttggatgatgag
gagaccggtagagtctatagttgcgtcgatctctacttcgtttctcaggatggttcggct
ttcaagtcgaagtacaagttccgtccttacttctatgcggctacgaaggagaaaatggaa
atggacgtggagggctatttgcgacggcgatatgaaagtcaaattgcttatattgagatt
gtagagaaggaggatttagatcttaaaaaccatttgtctggtttacacaaatcatattta
aaaatatcttttgctaccgtacaacaattaatggatgtcaagagagatctgttgcatgtt
gttgaaagaaatcaggcaaagtctgatgcagcagaagcatacgagtccatattaacagga
aaaagggaacaaagacctcaggattttcttgattgcatcattgaccttcgggagtatgat
gtcccataccatgttcgctttgccattgataatgatatacgttgtggccagtggtatgat
gttagtgtctctagtactggtgtcaagcttgagaagaggacggatcttctgcaacgtgct
gaggttcatgtttgcgcatttgatattgaaacaaccaagcttcctttgaaatttccagat
gctgactatgatttgataatgatgatatcatacatggttgatggacaaggttatctgatt
accaacagagagtgcgtgggggaagatatagaggatttagaatatacaccaaaacccgaa
tatgaaggctgtttcaaagtgacaaatgtgaaaaatgaggttgagcttcttaaacagtgg
tttgcccacatgcgagaggtgaagcctggtatttatgttacatacaatggggattatttt
gactggcccttcctggaaagcagagcagcttatcacgggttcaagatgggtgatgaggtt
ggattctcatgtgacaagaatcaaggggagtgccgtgctaaatttgcttgccatttggat
tgttttgcttgggtcaaacgtgatagttatttgcctcagggaagccaaggccttaaggcg
gttacgaaggcaaagttgggttatgatccgcttgaggtgaatccagaggacatggttcgc
tttgctaaagaaaagcctcagatgatggcctcctattcggtttctgatgctgttgcaact
tattatttgtacatgacctatgtgcatcccttcattttctctctcgcaaccataattcct
atgtcaccagatgaggtcttacgcaaaggtagtgggacactttgtgaaatgcttctgatg
gtgcaggcatatatggcaaatgttatctgccctaacaagcaccaatctgaccaagataag
ttctataagagtcaccttcttgagagtgagacgtatatagggggtcatgtggagtgcctt
gaaagtggtgttttcagatctgatcttccaaccagttttaagcttgatccttctgcctat
gaactacttatcaaaaaccttgatcgagatctgcaatatgctataagagtagagggtaag
atggacctggatttaatctccaattatgatgaagtgaagaatgttatcatggaaaagctt
gtgtgtctgagagatgaacctgttcgtgaagaatgtccacttatttatcatcttgatgtg
gctgcaatgtatccaaacattatcttaacaaacaggcttcagcccccatctatagttaca
gacgagatctgtactgcttgtgacttcaaccgcccagacaaaacttgtctacggaagctt
gaatgggtttggcgtggagagatatttatggcaaagaaaagtgactattatcatttgaag
aagcaaattgagtccgagtttgttgatggcactgatggtcagttttcaaaatcttttctt
gatctgtccaagatggatcaacaatcaaagctgaaagagcgtcttaagaaatactgtcag
aaggcatataaacgggtactcgacaaacctgttactgaagttcgagaagctgggatctgc
atgcgggaaaactcattttatgtagacactgttcgtagctttcgagatagaaggtatgaa
tataaagggcttaataaggtttggaaggggaagctgtcagaagccaaggctagtggaaat
tctattaagatccaagaagcacatgacatggttgtgctttatgattcgttgcaacttgct
cacaaatgtattctgaattcattctatggatatgtcatgcgcaagggtgcaagatggtat
tcaatggaaatggctggtgtagttacatatacaggagcaaaaatcattcagaatgctcgt
ttgcttgttgataaaattggaaagccacttgaattggacacagatggtatttggtgtgtc
ctccctggatgttttccagagaactttacttttaaaacaaaggactcgaagaaaaagctg
acaatctcgtatccatgtgttatgctcaatgtcgatgtggcaagaaacaacacaaatgaa
caataccagacacttgtagaccctgtaaataaaacatatgcaactcatagtgaatgctca
attgaatttgaagtggatggcccatacaaggcaatgattcttcctgcttccaaggaagaa
ggaattttaattaagaagcgatatgctgttttcaatgatgatggaacccttgcagagctt
aaaggttttgagatcaagcgtagaggtgagctgaagctcatcaaagttttccaggctgag
cttttcgacaagttcctccatgggtcaaccttagaggaatgctactcagctgtagctgct
gtggcaaaccgctggctggatcttcttgataatcaagggaaggatattgctgacagtgag
ttgcttgattacatatctgaatcaagcacaatgagcaagtccttgtccgactatggtcaa
caaaagtcatgtgcagtaactactgctaggcgtcttgctgattttcttggtgatacaatg
gttaaagataaaggattgcgttgccagtatatagttgcatgtgaaccaaggggaacacct
gttagtgagcgtgctgttcctgttgcaatatttgaaactgatcccgaaataatgaagttc
tatttacgaaaatggtgcaagacttcttcagatgttggtatccgctccatcattgactgg
tcttattacaagcaacgacttggttcagcaattcaaaaaattgttacaattcctgctgca
atgcaaaaggttgcgaaccctgttcctagggtagttcatcctgattggctgcacagaaaa
gttcgtgagaaggaggacaaatttcgtcagcggaaattggttgatatcttcaacttacgc
agcagggatgatctctccagaaagatggatgatgccaccatcaaaaatcatgatgaggcg
aatgttaaagatttggaagacttccaaatcaaaagcagttctataaataggcctagacca
attgttcgttgttatgatgtcaatgaaaaacgttcagcaaagaaaactggccaattgaat
tctgcagaacagcaaactgatagtgtgcatgaattgtcttcacagccgcaacacaatact
tcctatgctgaaaatattgacagaaatgtagattatcaaggatggcttgaattaaagaag
agaaaatggaaagatattttagacaggaggaagaaacaaaggttgagcaatacaaggact
tcacaccatattactgatgcatctgaactgctgggtggtctaaccaatcataaaggagct
cagcgcagaactggagttggttcatattttactacacatgaagtagccctaacacgatgc
cactggcagataatacagctacttccaagttcacgttgtggccaattttttgcatgggtt
gttgtggagggaatcatgcttaagattcctataactattccacgagcattttacctcaac
gctaaagcacccgcgatggaaaattttcctggtaggcgtgtcaccaagacgcttcctcat
ggaaggccgagctataacctagttgaggtcattatagatgaagacaagtttaggaaggaa
agcaagaaactagcagctcttcttgcagacccagaagttgaggggatatatgaatcaaag
gtgccattggagtttaatgcggtaatccaaattggttgtgtctgtaaagtggataaaact
gctaaaaaacgaaatgcccaggatggctggagtctgagtgagctgcatatgaagactaca
acagaatgttcctatttggagcaatcaatatctttcttttacatatatcatagcatctct
gaaggacgtgctatatatgtcatttatttgcctgcattggggacggtatctgttgtggtt
gttaatccttaccaaaataaggatataacaccatcttttcttgaaagacaattccgggaa
gcttgccaagcattgtcaattgaagcaatacctcctaggaatagtattgttttcaaggtg
gactatgttggacatgtcaaggatgctgaaaagattttacaaggaacaattagcgaactc
agagacaagcatcatggacctacacttgctgtcattgaatgcccaaatgcacacttgatg
aagtcaggtgtaccagctcttgatgatttcccttgtgtgagcataccttcgaatgctcgt
gatagtcagtatcaggtacttgggtggcaacaagcatctgcaaaaattggcatgcaacgt
tctgctgcatcatctcagtggttgaatgaaagaatttctctctcaagatatgcccatgta
cccttgggaaattttgaacttgactggcttatattcacggcagatgtcttcttttcgaga
gcattacatgatcaacaacaggtgctttggatatctgatgatggtgttccagatttagga
ggtaatcatgaagaatctacatgttttgctgatgaggtccaacaacctgttctaacatac
cctggagcatataggaaagtttctgtcgaattaaagatacatcacctggctgtagatgct
cttctgaaaagtaaccaaataaatgaaatggaaggaggtgctttgttaggattcgaccag
gacatgaattccagtacaactctatatgatcagagtggctttgacgaggctacctcatct
gcatctggattgcgtgtcctgaaacagctgatccagaggtgccttgcagatgcagttaca
tcaggaaatgtttttgctgatgcaattttacaacatctgtatcgttggctttgcagccct
caatcaaagcttcatgatccagctcttcaccgtatactccacaaggtcatgcaaaaggtt
tttgctttgctgttggctgaattacgcaaattaggtgccacaatcatatttgccaatttt
tcgaaggttatcatagacacaggaaaattcgaattaactgctgccaaagcttactgtgac
agcgtgctcaaaactttgcaaaatagagaactgttcgagtggattgagcttgaaccattg
cagttttggcattccttgctctttatggatcagtataactacggtggcattccagccaga
cctgatgacagttctcacaatgatttgcatcatcactccccaagagaagaaccaaaagtg
gatattgtgtcaaattggaatattgctgaatacctgcccaagaaaatccaggatcatttc
gttttaattgtctcagaattcatgtttattccctgggactatgcacaaaagcaagctgca
acaagagaagctttgcgcgatggcaactcatgtactccatcaatcaccattgtagctgct
gagaattttgaatcacacatggtggaatatattaaagggcagatcggcacacacttcaca
gacaaacttctaggaattgctcgagatactgttcttcacatgaaggggataaacaaatct
gagaatggccaacagatttcactcggtatccagcaacctgcgggcatgaaccacaaaggg
gatcctgcactggaattcattaagcatgtttgtgctgtcctggctcttgaccagcacgtg
cagcatgaagttctggtgatgagaaagaatctgttaaaatatgtacgtgttcgggagttt
gctccagaagctgagtttcatgatccctgtccttcctttatcttaccaaatgtaatttgc
agctactgcaatgactgcagagacctggacttgtgtcgtgactcagctgtattggcagag
gagtggcgttgtgccgttccacagtgtggccagccttatgaccgagaagtaatggagaat
gctcttcttcaaattgtacgacagagggagcgtctttatcatttgcaggatctggtatgt
cttaggtgcaatcaggtcaaagctgctcatttatcagaacagtgtgcatgtgctggatcg
tataggtgcagggaagatgtgtctgaattccgcagaaaaatgcaaattttcttgaatgta
gccattcgtcagaagtttcaactcctccaggagtgtacctcttggattttagaagtcatc
ttataa

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