KEGG   Populus trichocarpa (black cottonwood): 18098185
Entry
18098185          CDS       T01077                                 
Name
(RefSeq) histone deacetylase 19
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03082  ATP-dependent chromatin remodeling
pop03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    18098185
   03083 Polycomb repressive complex
    18098185
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:pop03036]
    18098185
Enzymes [BR:pop01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     18098185
Chromosome and associated proteins [BR:pop03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     18098185
   HDAC complexes
    Sin3A-HDAC complex
     18098185
    BRAF-HDAC complex
     18098185
    REST complex
     18098185
    SHIP complex
     18098185
    MiDAC complex
     18098185
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     18098185
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    18098185
  Chromatin remodeling factors
   NuRD complex
    18098185
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 18098185
NCBI-ProteinID: XP_024455581
LinkDB
Position
4:21633622..21637090
AA seq 501 aa
MDTGGNSLSSAAPDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHM
QVLKPFPARDRDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLYSFCQ
TYAGGSVGGAVKLNHNLCDIAVNWAGGLHHAKKCEASGFCYVNDIVLAILELLKVHERVL
YVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDVRDIGYSKGKYYSLNVPLDDG
IDDESYHFLFKPLIGKVMEVFKPGAVILQCGADSLSGDRLGCFNLSIKGHAECVKFMRSF
NVPLLLLGGGGYTIRNVARCWCYETGVALGIEVDDKMPQHEYYEYFGPDYTLHVAPSNME
NKNSHQVLEEIRCKLLDNLSKLQHAPSVQFQERVPDTELPEAEEEQNEADERWDPDSDMD
VDEERKPLPGRVKREIVEAEPKESEGQKGSSGHARGFDTTIAENASGKALDAGPKQIDEA
GVRVEQENVNKASSDQMFSKS
NT seq 1506 nt   +upstreamnt  +downstreamnt
atggacactggtggcaactctctctcgtccgctgctcctgacggggttaagagaaaggtt
tgctatttctacgatccagaagtcggcaattactattatggccaaggtcaccccatgaag
ccccaccgcattcgaatgacccatgctctgcttgcccactatggtttgcttcagcacatg
caggtcctcaagccctttcctgctcgcgaccgggatctttgccgcttccatgccgatgat
tatgtctctttcctccgcagcattacccctgagacccagcaggaccagctcaggcagctc
aagcgctttaatgtcggtgaagattgccctgtttttgatggcctctactccttctgccag
acttatgctggtggatctgttggtggtgccgtcaagttaaatcacaacctctgtgacatt
gctgtcaattgggctggtggcctccatcatgctaagaagtgtgaggcttctggtttttgt
tatgtcaatgacatcgtgcttgcaatcctggagcttcttaaagtgcatgagcgtgttctg
tatgtggatatcgacattcatcacggtgacggtgtggaggaagcattttacaccactgat
agagtcatgactgtttcattccataaatttggagattattttcccggcactggggatgta
cgtgatattggatattcaaaaggaaaatactactctcttaatgttccgttggatgatggg
attgatgatgagagctatcatttcttgtttaaaccactaattggaaaagtaatggaagtt
tttaagccaggcgctgtgattctccaatgtggtgccgactcattatccggggatagatta
ggatgcttcaatctttcaatcaagggccatgcagagtgtgttaaatttatgagatctttt
aatgtgccattattgctattgggtggtggtggctacaccattcgaaatgtcgctcgctgc
tggtgctatgagactggagttgcacttggaatagaagttgatgataagatgcctcagcat
gagtattatgagtacttcggtccagattatactcttcatgttgcccctagcaacatggaa
aataagaattcccaccaggtacttgaggaaatacggtgcaagctccttgataatctttca
aagcttcagcatgcacccagtgtccaatttcaggaaagagtacctgatactgagcttccg
gaggcagaagaagaacagaatgaagcagatgagagatgggatccagattccgacatggat
gttgatgaagaacgcaagccattaccaggcagagtcaagagagaaatagttgaagctgag
ccaaaagagtcggagggccagaaaggaagttctgggcatgctagaggctttgatacaaca
atagccgagaatgcaagtggaaaggctctggatgctggtcctaagcaaattgatgaggca
ggtgtgagagttgagcaggagaatgtgaacaaggcatcttctgatcagatgttctccaag
tcatga

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