Populus trichocarpa (black cottonwood): 18098185
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Entry
18098185 CDS
T01077
Name
(RefSeq) histone deacetylase 19
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03082
ATP-dependent chromatin remodeling
pop03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
18098185
03083 Polycomb repressive complex
18098185
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pop03036
]
18098185
Enzymes [BR:
pop01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
18098185
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
18098185
HDAC complexes
Sin3A-HDAC complex
18098185
BRAF-HDAC complex
18098185
REST complex
18098185
SHIP complex
18098185
MiDAC complex
18098185
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
18098185
Heterochromatin formation proteins
Other heterochromatin formation proteins
18098185
Chromatin remodeling factors
NuRD complex
18098185
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
18098185
NCBI-ProteinID:
XP_024455581
LinkDB
All DBs
Position
4:21633622..21637090
Genome browser
AA seq
501 aa
AA seq
DB search
MDTGGNSLSSAAPDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHM
QVLKPFPARDRDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLYSFCQ
TYAGGSVGGAVKLNHNLCDIAVNWAGGLHHAKKCEASGFCYVNDIVLAILELLKVHERVL
YVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDVRDIGYSKGKYYSLNVPLDDG
IDDESYHFLFKPLIGKVMEVFKPGAVILQCGADSLSGDRLGCFNLSIKGHAECVKFMRSF
NVPLLLLGGGGYTIRNVARCWCYETGVALGIEVDDKMPQHEYYEYFGPDYTLHVAPSNME
NKNSHQVLEEIRCKLLDNLSKLQHAPSVQFQERVPDTELPEAEEEQNEADERWDPDSDMD
VDEERKPLPGRVKREIVEAEPKESEGQKGSSGHARGFDTTIAENASGKALDAGPKQIDEA
GVRVEQENVNKASSDQMFSKS
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atggacactggtggcaactctctctcgtccgctgctcctgacggggttaagagaaaggtt
tgctatttctacgatccagaagtcggcaattactattatggccaaggtcaccccatgaag
ccccaccgcattcgaatgacccatgctctgcttgcccactatggtttgcttcagcacatg
caggtcctcaagccctttcctgctcgcgaccgggatctttgccgcttccatgccgatgat
tatgtctctttcctccgcagcattacccctgagacccagcaggaccagctcaggcagctc
aagcgctttaatgtcggtgaagattgccctgtttttgatggcctctactccttctgccag
acttatgctggtggatctgttggtggtgccgtcaagttaaatcacaacctctgtgacatt
gctgtcaattgggctggtggcctccatcatgctaagaagtgtgaggcttctggtttttgt
tatgtcaatgacatcgtgcttgcaatcctggagcttcttaaagtgcatgagcgtgttctg
tatgtggatatcgacattcatcacggtgacggtgtggaggaagcattttacaccactgat
agagtcatgactgtttcattccataaatttggagattattttcccggcactggggatgta
cgtgatattggatattcaaaaggaaaatactactctcttaatgttccgttggatgatggg
attgatgatgagagctatcatttcttgtttaaaccactaattggaaaagtaatggaagtt
tttaagccaggcgctgtgattctccaatgtggtgccgactcattatccggggatagatta
ggatgcttcaatctttcaatcaagggccatgcagagtgtgttaaatttatgagatctttt
aatgtgccattattgctattgggtggtggtggctacaccattcgaaatgtcgctcgctgc
tggtgctatgagactggagttgcacttggaatagaagttgatgataagatgcctcagcat
gagtattatgagtacttcggtccagattatactcttcatgttgcccctagcaacatggaa
aataagaattcccaccaggtacttgaggaaatacggtgcaagctccttgataatctttca
aagcttcagcatgcacccagtgtccaatttcaggaaagagtacctgatactgagcttccg
gaggcagaagaagaacagaatgaagcagatgagagatgggatccagattccgacatggat
gttgatgaagaacgcaagccattaccaggcagagtcaagagagaaatagttgaagctgag
ccaaaagagtcggagggccagaaaggaagttctgggcatgctagaggctttgatacaaca
atagccgagaatgcaagtggaaaggctctggatgctggtcctaagcaaattgatgaggca
ggtgtgagagttgagcaggagaatgtgaacaaggcatcttctgatcagatgttctccaag
tcatga
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