Populus trichocarpa (black cottonwood): 18098491
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Entry
18098491 CDS
T01077
Name
(RefSeq) LOW QUALITY PROTEIN: FACT complex subunit SPT16-like
KO
K25639
FACT complex subunit SPT16
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pop03036
]
18098491
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
FACT complex
18098491
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SPT16
FACT-Spt16_Nlob
Peptidase_M24
Rttp106-like_middle
SPT16_C
Motif
Other DBs
NCBI-GeneID:
18098491
NCBI-ProteinID:
XP_024456354
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Position
5:complement(397114..403588)
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AA seq
1121 aa
AA seq
DB search
MAESRNANAKSSNGKPSGAVSPYAIDLDNFTKRLNLLYSHWKEHHNDLWGASDVLAIATP
PASEDLRYLKSSALNIWLVGYEFPETIMVFLKKQIHFLCSQKKASLLEVVKKSAKEAVGL
EVVIHVKTKSDDGSGLMDIIFHAVHAQSNSNGHDTPVIGHIARESPEGKLLETWDEKLKN
ANCELSDVTNGFSDLFAVKDSIELTNVRKAAFLTASVMKQFVVPKLEKVIDEEKKISHSS
LMDDTEKAILEPARIKVKLKAENVDICYPPIFQSGLEFDLKPSAASNDENLYYDSTSVII
CAIGSRYNSYCSNIARTFLIDANPLQSKAYEVLLKAHEAAISELKSGNKISAVYQAALSV
VEKDAPELIANLTKTAGTGIGLEFRESGLSLNSKNDRTLRQGMVFNVSLGFQNLQAETKN
PKTQKYSVLLADTVIVGEKIPDVVTSKSTKAVKDVAYSFNEDDQEEDQPKVKPELRGSKT
ILSKATLRSDNHEMSKEELRRQHQAELARQKNEETARRLAGGGSSATDNRGGAKTIGDLV
AYKNVNDLPPPREFMIQVDQKNEAIILPIHGSMVPFHVATVKSVSSQQDGNXTCYIRIIF
NVPGTPFSPHDANSLKFQGSIYLKEVSFRSKDSRHISEVVQQIKTLRRQVTSRESERAER
ATLVSQEKLQLSSTKFKPIKLLDLWVRPPFGGRGRKLTGSLEAHANGFRYSTSRPDERVD
VMFGNIKHAFFQPAEKEMITLVHFHLHNHIMVGNKKTKDVQFYIEVIDVVQTIGGGKRSA
YDPDEIEEEQRERDRKNKINMDFQNFVNRVNDVWGQPQFKALDLEFDQPLRELGFHGVPH
KVSAFIVPTSSCLVELIETPCVVITLSEIEIVNLERVGLGQKNFDMTVVFKDFKRDVLRI
DSIPSTSLDGIKEWLNTTDLKYYESRLNLNWRPILKTITDDPEKFIEDGGWEFLNMEVSD
SDSENSVDSDQGYVPSDVQSDSGSDDEDDDSESLVESEDDEEEDSEEDSEEEEGKTWEEL
EREASYADREKGNDSDSEEERKRRKIKALGKSREPARPPTRPPARLPARPPARPPARPPA
RPPARPLVRPPDRRNVSGSLPKRPKLSKEKGWLGFLEIITS
NT seq
3366 nt
NT seq
+upstream
nt +downstream
nt
atggctgaaagtaggaatgctaatgcaaaatcctcaaatgggaagccttcaggagctgtc
agtccatatgcgatagatttggataacttcactaagcgcttgaacttgttatattcacat
tggaaggaacaccataatgacctatggggtgcttctgatgttcttgccatagcaacgcct
ccagcttcagaggatctccggtatctgaagtcatcagcactgaatatttggttggttgga
tatgagttcccagagacaattatggtcttcctgaagaagcagatccatttcttgtgtagc
cagaaaaaggcttctttgcttgaggttgttaagaagtctgccaaagaggctgtgggtctt
gaagttgtgatacatgtgaagaccaaaagtgacgatggaagtggtttgatggatatcatt
tttcatgcagtccatgctcagtcaaactccaatggtcatgatactcctgtcattggacat
atagctagagaaagtcctgaagggaagcttttggaaacatgggatgagaaactaaagaat
gctaattgtgagctaagtgatgtaacaaatgggttctctgacttatttgctgtcaaagac
agtattgagcttacaaatgtaaggaaagcagctttcttgactgcttcagtgatgaagcag
tttgtggtgccaaagcttgaaaaagtcattgatgaggagaagaagatctcccattcttca
ttgatggatgacacagagaaggcaatattggaacctgcaagaattaaggtaaagctgaag
gcagagaatgttgatatatgctatcctccaatttttcagagtggattagagtttgatctg
aaaccgagtgctgcaagcaatgatgagaacctctactatgactctactagtgtgatcata
tgtgcaattggttctagatacaacagctactgctcaaacattgcaagaacttttctgatt
gatgccaatccgttgcagagcaaggcatatgaggtcctccttaaggcccatgaagcagca
atcagtgaattgaagtctgggaacaagattagtgctgtgtatcaagcagcactctctgtg
gttgagaaggatgctcctgaattaattgcaaacttgaccaaaactgcaggaactggaatt
ggccttgagtttcgtgagtcagggctaagtcttaattccaagaatgatcgaactctgaga
caaggaatggttttcaatgtgtctcttggctttcagaacttgcaggcagagaccaaaaac
ccaaagacccagaagtattctgtcttgctggcagatacagtgattgttggtgagaagatt
ccagatgtggtgacttcaaagagtactaaagctgttaaagatgtggcatactcattcaat
gaggacgatcaggaagaagatcagccaaaagtcaagcctgaacttagagggagtaagacc
atcttgtctaaggcaacacttaggtcagacaaccatgaaatgtcaaaggaggagctacga
aggcagcaccaggcagagcttgcccgccagaagaatgaagagactgctaggaggcttgct
ggtgggggttcaagtgcaacagataatcgaggtggtgcaaagacaattggtgatttggtt
gcgtataagaatgtcaatgatctgccccctcctcgggagtttatgattcaggttgaccaa
aagaatgaagccataatattaccaattcatggaagtatggttcctttccatgtcgccact
gtgaagagcgtgtctagtcagcaggatggtaactgaacttgctacatacgaataatattt
aatgtgcctggcacccctttcagccctcatgatgcaaattcccttaagtttcaagggtct
atatatttaaaggaggtttcatttcgttcaaaggactctagacatataagtgaagtggta
cagcagattaaaaccctacgtcggcaggttacttctagagaatctgagagagctgagagg
gcgaccttagttagtcaggaaaagcttcagctatcttctaccaaattcaagccaataaaa
ttgttagatctatgggttcgtcctccttttggtggtcgtggaagaaaattgactggctca
cttgaagcccacgcaaatggctttcgctattcaacttcacggcctgatgaacgtgttgat
gtaatgtttggtaacatcaagcatgcattctttcagccagcagagaaggaaatgattact
ctcgtgcactttcatttgcataatcacataatggtggggaacaaaaagaccaaggatgtg
caattttatattgaggtgattgatgtggtccagacaattggaggggggaaaagatcagcc
tatgaccctgacgagattgaggaggaacaacgtgagagggatcggaagaataaaattaac
atggacttccagaactttgtgaaccgggtgaatgatgtatggggccaacctcaatttaaa
gcacttgaccttgagtttgatcagcctttaagagagcttgggttccatggggttccccat
aaagtttcagccttcatagttccgacatcgagttgcttggttgagctgatagagactcct
tgtgtggttataactctgagtgagattgaaatagttaacctggagagagttggccttgga
cagaagaattttgatatgactgttgtcttcaaggacttcaaacgggatgtcctacggata
gactctatcccctctacgtcactagatggcataaaggagtggctaaacacgactgacctc
aagtattatgagagtagattaaatctgaactggcggcctatactgaaaactatcactgat
gatccggaaaaattcatagaggatggtgggtgggaatttttaaacatggaagttagtgat
tcagattctgaaaactcagtggactcggaccaagggtatgtgccttcagatgtgcaatct
gattcaggttccgatgatgaagatgatgacagtgagtctttggtggagtccgaggatgat
gaggaagaggactctgaggaagattcagaggaggaagaaggaaagacatgggaagagttg
gagagagaagctagttatgctgacagggagaaggggaatgattcagatagcgaagaggag
agaaaaagaaggaagatcaaggcacttggtaagtctcgagagccagctcgaccacccact
cgaccaccagctcgactgccagctcgaccaccggctcgacccccggctcgaccgccggct
cgacccccagctcgaccgctagttcgaccacctgatagaagaaatgtgagtggcagtctt
cccaagaggcccaaactaagcaaagaaaagggatggttggggtttttggaaattataact
tcttaa
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