Populus trichocarpa (black cottonwood): 18099128
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Entry
18099128 CDS
T01077
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03020
RNA polymerase
pop03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
18099128
09124 Replication and repair
03420 Nucleotide excision repair
18099128
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pop03021
]
18099128
03400 DNA repair and recombination proteins [BR:
pop03400
]
18099128
Enzymes [BR:
pop01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
18099128
Transcription machinery [BR:
pop03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
18099128
DNA repair and recombination proteins [BR:
pop03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
18099128
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
TACC_C
Motif
Other DBs
NCBI-GeneID:
18099128
NCBI-ProteinID:
XP_006383037
UniProt:
U5GEY7
LinkDB
All DBs
Position
5:complement(7736500..7745766)
Genome browser
AA seq
1837 aa
AA seq
DB search
MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVIQIEHSETTERGKPKPGGLSDPRLGTI
DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDHK
FKQALKIKNPKSRLKKILDACKNKTKCEGGDEIDVQGQDNEEPVKKSRGGCGAQQPKLTI
EGMKMIAEYKVQRKKSDDQEQLPEPVERKQTLTAERVLSVLKRISDEDCQLLGLDPKYAR
PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERSGAPAHIIS
EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPTIVKPRPLWTGKQVFNLIIPKQIN
LIRTAAWHMDSERGMITPGDTLVRIEKGELLSGTLCKKTLGTSSGSLIHVIWEEVGPDAA
RKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMEKINETISNAKNEVKDLIRKAQNKEL
EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQK
LDSLKMKKAEFDRVFRYEFDDEDWNPTYMMTDHVEDLRNIRELRDVFDAEVQKLEADRYQ
LGTEIATTGDNTWPMPVNLKRLIWNAQKTFKIDTRIGRVSDIHPMEAVEAVDKLQERLKV
VPGDDLLSVEAQKNATLFFGILLRSTLASKRVLQEYRLSREAFDWVIGEIESRFLQSLVA
PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVY
LKPEFNKTKEKAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDADFVKSYYEMPDE
EVAPEKISPWLLRIELNREMMIDKKLNMADIAEKINHEFDDDLTCIFNDDNAEKLILRIR
IMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNAKVSSFDESEGF
KTTEEWMLDTEGVNLLAVMCNENVDARKTTSNHLIEVIEVIGIEAVRRSLLDELRVVISF
DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAET
DYLRGVTENIMLGQLAPIGTGYCALYLNDEMLKNAIELQLPSYMEGLDFGMTPARSPVSG
TPYHDGMMSPMLMSPNLRMSPTVDGVAFSPYVGGMAFSPSTSPVSTSIGYSPSSPVYSPG
YSPTSPSYSPASPSYSPASPSYSPTSPTYSPSSPSYSPTSPAYSPTSPSYSPTSPSYSPT
SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSY
SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYNPQSAKYSPSLAYSPSSP
RLSPASPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQYSPS
AGYSPSAPGYSPSSTSQYTPQTSTKGDRDKKDSKSTR
NT seq
5514 nt
NT seq
+upstream
nt +downstream
nt
atggatacgcgatttccttactcaccagcggaggttgctaaagtccgtatggttcagttt
ggcattctcagccccgacgagataaggcaaatgtctgtgatacaaattgagcacagtgag
acaacagaaagaggaaaaccaaagccaggaggattaagtgatccgcggctgggtactatt
gatagaaagatgaagtgtgagacttgcacggcaaatatggcagagtgtccagggcatttt
gggcacttggagcttgcgaagcccatgtttcatattgggtttatgaagactgtgcttagt
atcatgagatgcgtttgcttcaattgctcgaagatattggctgatgaagaggatcacaag
tttaagcaagccttgaaaataaagaatcccaaaagcaggcttaaaaagattttggatgct
tgcaagaataaaactaaatgtgaaggtggggatgaaattgatgttcaaggtcaagataat
gaagagccagttaaaaagagccgtggtggctgtggtgctcagcagccaaaactcaccatt
gaaggtatgaagatgattgcagagtacaaggttcaaaggaagaaaagtgatgatcaggaa
cagctgccagaacctgtggagagaaagcagacccttacagcagaaagggtcttaagtgtt
ttgaagaggataagtgatgaggattgtcagttgctgggcttggaccctaagtatgcacgt
cctgattggatgattctccaagtccttccaattccgccacctccagtgaggccctctgtg
atgatggatacatcctccaggagtgaggatgatttgactcatcagttagcaatgataatt
cgacacaatgagaatctgagaagacaggagaggagtggggcacctgctcatatcatatcc
gagtttgcacagttgttgcagttccatgtagctacatattttgacaatgagttgcctgga
cagcctcgggccacacagagatcagggagaccaattaaatctatatgtagcagacttaag
gcaaaggaaggccggattaggggtaatttgatggggaaacgtgtggacttctctgcacgt
acagttattacaccagatcccaccattaacattgatgaattaggagtaccatggagtatt
gctctgaatctcacatatccagaaactgtgaccccttataacattgaaaggttaaaggag
cttgttgagtatgggccacatcctccacctggtaaaaccggtgctaaatacatcataagg
gatgatggacaaagactcgatcttcgctacttgaagaaaagtagtgatcatcatctggag
ctcggttacaaggtggagcgtcatttaaatgacggtgactttgtcctctttaatcgtcaa
cccagtctccataaaatgtcaataatggggcacagaatcaagattatgccatattctact
ttccgcctgaacctgtcagttacttcaccatacaatgctgattttgatggtgatgaaatg
aatatgcatgtcccacaatcatttgaaactagagcggaagtattagagctaatgatggtg
cctaagtgcattgtgtcacctcaatcaaaccgacctgtaatgggaattgtacaggataca
cttttaggatgccgcaaaatcaccaagagggataccttcatagagaaggatgttttcatg
aacatcttgatgtggtgggaggatttcgatgggaaagttcctgctccaacaattgtgaag
ccacgaccactttggaccgggaaacaggtttttaaccttatcatacccaagcagattaat
ttgattagaactgctgcctggcacatggattcagagagaggaatgatcactccaggggat
acattagtccgcatagaaaaaggggagctgctttctggaactctctgcaaaaaaacgctt
gggacttcttctggaagtcttatacatgtcatttgggaagaggttggcccagatgcagct
cgcaaatttttggggcatacacagtggctagtgaattattggcttttgcaaaatgctttc
agtattggaattggagataccattgctgatgcatcaacaatggaaaaaattaatgagact
atttcaaatgcaaaaaatgaggtgaaagatcttattaggaaagcacagaataaggagttg
gaggctgaacctggacggactatgatggaatcatttgaaaacagagtgaaccaggtgttg
aataaagctcgtgatgatgcaggaagcagcgcccaaaaaagtttatctgagagtaacaat
ctcaaggcaatggtcactgctggatcgaaggggagtttcattaacatatcacagatgact
gcttgtgtggggcagcaaaatgttgagggtaagcgtataccatatggtttcattgaccgg
acgttgcctcacttcaccaaggatgattatggtccagaaagtcgtgggtttgtggagaac
tcatacttgcgtgggttaaccccacaagagttcttttttcatgccatgggtggtagggaa
ggtctcattgatactgcagtgaagacttctgaaactggctacatccagaggcgacttgtg
aaggccatggaggatattatggtcaaatatgatggtacagtaaggaactcattgggggat
gtcattcagtttctatatggggaagatggtatggattctgtctggatagaatcacaaaaa
ttggattctctcaaaatgaagaaagcagaatttgacagggtatttagatatgaatttgac
gacgaagactggaatcctacttacatgatgactgatcacgttgaggatttgagaaatatc
cgagaattgcgtgatgtgtttgacgctgaagttcaaaaacttgaagcagatagataccaa
cttggaacagaaattgccaccacaggtgataatacatggccaatgcctgttaacctcaag
aggcttatctggaatgcacagaagactttcaagattgatacaagaattggaagagtttca
gatattcacccaatggaggctgtggaagctgttgataagcttcaggagagacttaaggtt
gttcctggtgatgatctgttgagtgtggaagcccaaaaaaatgccactctcttctttgga
atcttgcttcgcagcactttggccagtaaaagggtgttgcaggaatacaggctcagtcgc
gaagcatttgattgggttattggtgagatagaatcacgatttttacagtcattagtcgca
ccaggtgagatgattggttgtgttgctgcacaatccattggagagcctgctactcaaatg
accctcaatactttccactatgctggtgttagtgcaaagaatgtcactctaggtgttcct
aggttgagggaaattattaatgtagctaaaaaaataaaaacaccttcactttctgtgtac
ctgaagcctgaatttaacaagacaaaggagaaggctaaaaatgttcagtgtgctttggaa
tacaccactctccgaagtgtcacacaagcaacagaagtgtggtatgatccagatcccatg
agtactataattgaagaggatgctgacttcgtgaagtcatattatgaaatgccagatgaa
gaggttgcaccggagaaaatatctccctggttgcttcgcatagagttgaaccgtgaaatg
atgattgataagaagctaaacatggctgacattgctgagaagatcaatcatgagtttgat
gatgatttgacttgtatctttaatgatgacaatgctgagaaactgattcttcgtatccgt
atcatgaacgatgaagctccaaagggggagttgaatgatgaatcagctgaagatgatgtt
ttcttgaaaaagattgagagtaacatgctgactgaaatggctcttcgtggtataccagat
atcaacaaggtgttcattaaaaatgccaaggtaagcagttttgatgagagtgaaggattt
aagactacggaggagtggatgctggatacagagggtgtcaatctcctggctgttatgtgc
aatgaaaatgttgatgcccgaaagacaacaagcaatcacttaattgaagttatagaagtg
attggaattgaagctgttcgtcgatccctactggatgaattgcgagttgtcatatcgttt
gatggatcttatgtgaattaccggcatctggctatactgtgtgatacgatgacctaccgt
ggtcacttgatggcaatcactcgtcatggtattaatcggaatgatactgggccaatgatg
agatgctcatttgaagagactgttgacattctccttgatgctgcagtatatgctgaaaca
gattacttgaggggcgtcaccgaaaatataatgctgggtcagcttgcaccaattggcact
ggatattgtgctctttatctaaacgatgagatgttgaagaatgctattgagctccagctc
cctagttatatggagggccttgattttggcatgacacctgctcgttctccagtttctggg
actccttatcatgatgggatgatgtctcccatgctgatgagtccgaatctccgcatgtca
cctactgtagatggagtggccttttcgccttatgttggtgggatggccttttctcctagt
acatctcctgtttcaacatctattggctacagcccatcatctccagtctacagtcctgga
tacagtcctacttcaccttcatacagccccgcctcaccaagttatagccctgcttcccca
agttatagcccaacctcacccacttatagtcccagttctcctagttatagcccaactagt
cctgcctattctcctacaagtccatcatactcccccacttcaccaagctacagccccact
tccccgagctacagccccacttcccccagctacagccccacttccccgagctacagcccc
acatcccccagctacagccccacatcccccagttacagccccacttcacctgcgtacagt
cccacttcacctgcgtacagtccaacatcacctgcgtacagccctacctccccatcatac
agccccacctccccatcatacagccccacatccccatcttacagccccacatccccatcc
tacagccccacttcaccagcctatagcccaacctcccctggctacagcccaacctcgcca
agttacaacccccaatcagcaaaatacagcccatcactggcatactcacctagcagtcca
agattgtcaccagccagtccttacagtccaacatctccaaattatagcccaacatcaccc
tcttattcgcccacatctccatcatattccccttcaagtccgacctacagtcctagcagt
ccatataattctggtgtcagcccagactacagcccaagttctccacagtacagtccaagt
gcaggatactcaccaagtgcccctgggtattcgccatcatctaccagccaatacactcct
caaacaagtaccaagggtgacagggacaagaaggatagcaagagcactcgatga
DBGET
integrated database retrieval system
