Populus trichocarpa (black cottonwood): 18100706
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Entry
18100706 CDS
T01077
Name
(RefSeq) sister chromatid cohesion protein PDS5 homolog C isoform X3
Organism
pop
Populus trichocarpa (black cottonwood)
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Gene cluster
GFIT
Motif
Pfam:
PDS5
PTM_DIR17_Tudor
LBR_tudor
Motif
Other DBs
NCBI-GeneID:
18100706
NCBI-ProteinID:
XP_024458822
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All DBs
Position
6:25908376..25917180
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AA seq
1030 aa
AA seq
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MASNSSDKELEQQLLEAGNKLLNPPPSVDELLSLLDQVENCLSKVEQSPVKSMQNALSPS
QNALVTDQLFRHSNIDVKVAVASCISEITRITAPDAPYDDDRMKEVFQLIVSSFENLDDK
SSQSYVKRASILETVAKVRSCVVMLDLECDALIIEMFQHFFKAIRDHHPEDVFSSMETIM
SLVLEESEDISVELLSLLLASVKKGDEEVLPVARRLGEEVLESCAAKVKPYLIQTVKSLG
VSLDDYSDIVGSICQEISGSVEQNDVHAGDENKVEESKPVGPSSDAAASQVNEEETTEVA
TPEQAEPANDKCPKSAVSNGVAQMEEDDSLADSDSMKKQEDDNKTDQLKSIDLPSTAEPD
FSNAERVVVNTESEAEQTSKKSEKSPTKLAEPSESSRVDSEKKAEELPGNKIHSEDVPGS
PHKDQPVEEAISSENVKETGSQPPSPKALEGDSVPVASPSVSENLPDESFSKKGGRAKKK
ESLNKHSAPSSDDVPNKLSDGTSGSEAKLHKCSGKEAPAGTSSEDKTPMRTDASKKESDT
TGEPEAKPLKQSSKKVDTLKESDTTNEPEAKARKQSSKKAGTLKESDTTNEPEAKARKQS
SKKVDASKKESDTSGEPEAKLPKQSSKKMDASKKESNTTDESEAKLLKQSSKKVDGSSNN
NNDGSTLKQFEDKKRQSHGKAVSEKHVTKSLMKDDDKEKTHSTKSAAKSAKEEHHLEETP
VTSTKRKRAAGDEKAPDIKEFDENVVGSKVKVWWPKDRQFYEGKIVSFDSIKKKHKVLYT
DGDEEILILKRQKFELIGDDSESDKEEAADHSSPETSSETRPLKKRMKTNSDKSTKQGKG
DDSSKRGSGASSSKSKSAAAKSGGKSKEVSKTGGKSVDDSKVKKSDDHGKNKDHTPKSGS
KSDVASETASKSKNDDLVTSKASKSKEDETSTPKPSKSKQETPKTGKSRHDPPKVSSSNT
KGKASKSGGKSNVNGAGKLKSSSSKVKEIDDEETSTDSDKVQQTAKVKMGSSSKGQGSEA
AKSGKKRRRT
NT seq
3093 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgaatagtagtgataaagagcttgaacaacagttactggaagctggaaacaag
cttcttaaccctcctccttctgttgatgagttgctctctcttcttgaccaagttgagaat
tgtttgtcaaaggtggagcagtcgcctgtaaaatcaatgcaaaatgcactttctccttca
cagaatgctcttgtcaccgatcaattgttcaggcattctaacattgacgtgaaagttgct
gttgcctcatgcattagtgagataacaagaataaccgcgccagatgcaccttatgatgat
gatcgaatgaaggaggtatttcagctgattgtatcatcgtttgaaaacctagatgacaaa
tctagccagtcatatgtcaagagggcctcaattcttgaaactgttgcgaaggttaggtca
tgtgtggtgatgctggatcttgaatgtgatgcactgataattgagatgttccagcacttc
tttaaggctataagggatcatcacccagaagatgtcttttcatcaatggagaccatcatg
tcccttgtcttagaagaaagtgaagatatttctgtggaattactgtcacttctactagct
agtgtgaaaaagggggatgaggaagttctacctgttgctcggaggttgggtgaggaagta
cttgaaagctgtgctgcgaaggttaaaccttaccttatacagactgtgaagtctttgggc
gtatctttagatgactacagtgacattgttggttcaatatgccaagaaatatctggttct
gttgagcagaatgatgtccatgctggtgatgaaaataaggttgaagagagcaagccagtt
gggccatcatccgatgctgctgcttctcaggtcaatgaagaggaaacaacagaagtggca
actcctgaacaagctgaacctgcaaatgacaaatgtccaaagtcagctgtgagcaatggt
gtcgcacagatggaggaagatgactccttagcagattcagattccatgaagaagcaggag
gatgataacaaaactgatcagttgaaaagcattgatttgccaagtactgctgaacctgat
ttttcaaatgctgaaagggtagtagtaaatacagaaagtgaggcagaacagacaagcaag
aagagtgagaagtctccaacaaaattggccgagccttcagagagttctcgtgttgactct
gagaagaaagctgaggaactccctggcaataaaattcacagcgaggatgttcctggttct
cctcataaagatcaacctgttgaggaagcaatatcttctgagaatgtaaaagaaactggc
agtcagcctccctcacctaaggcattagagggtgattctgtacctgttgcttccccatct
gttagtgaaaaccttcctgatgaaagtttttccaaaaagggtggacgagcaaagaaaaaa
gagagcttgaacaaacattctgcaccatcttctgatgatgtaccaaacaagttatctgat
ggaacaagtggttcagaagcaaaactgcataaatgctctggaaaagaggcacctgctggg
acttcaagtgaggataagacaccaatgaggacagatgcatccaagaaggaaagtgacacc
actggtgagccagaagcaaaaccactgaagcagtcatctaaaaaggtggacacattgaag
gaaagcgacaccactaatgaaccagaggcaaaagcaaggaagcagtcatctaaaaaggcg
ggcacattgaaggaaagcgacaccactaatgaaccagaggcaaaagcaaggaagcagtca
tctaaaaaggtggatgcatccaagaaggaaagtgacaccagtggtgaaccagaggctaaa
ctgccgaagcaatcatctaaaaagatggacgcatccaagaaagaaagcaacaccactgat
gaatcggaggcaaaattgctgaagcagtcgtctaaaaaagtggatggaagcagcaacaac
aacaatgatggatcaactttaaagcaattcgaggataagaaacggcagagtcatggaaaa
gcagtttctgaaaagcatgtaaccaaaagtttaatgaaagatgatgacaaagaaaagacc
cattcaaccaagtcagctgcaaaatcagcaaaagaggaacatcacttagaggagacccct
gtgactagcaccaagaggaagcgtgctgctggtgatgaaaaagcacctgatattaaagaa
tttgatgaaaatgtggttggttcaaaggttaaagtatggtggccaaaagatcgccaattt
tatgaaggtaaaattgtatctttcgactcgattaagaagaagcataaggtcttatatact
gatggcgatgaagaaattttaattctcaaaaggcaaaaatttgagttgattggtgatgac
tctgagtcagacaaggaagaagcagcagatcactcaagtcctgagacctcttctgaaacc
aggcccctgaagaagagaatgaaaacaaattctgacaagtcaactaagcaaggaaagggg
gatgattcctcaaaaaggggtagtggagcttcctccagcaaatccaaaagtgctgcagca
aaatctggaggaaagtcaaaggaagtcagtaaaactggtgggaaatccgtggacgactct
aaagttaagaaatcagatgatcatggcaaaaacaaggatcatacccctaaaagtggaagt
aaatctgatgttgcttccgaaactgccagcaaatccaaaaatgatgacttggtgacatcc
aaggctagcaagtccaaagaagatgagacaagcacgcccaaaccctccaagtccaagcaa
gaaaccccgaagactggcaagtccaggcatgatcccccaaaggtttcctcctctaatacc
aaaggtaaagcctcaaaaagtggtggcaaatctaatgtcaacggcgctggtaagttgaaa
tcaagctcatcaaaggtgaaagaaattgatgatgaagagacctcaacagattcagacaaa
gtgcagcaaactgcaaaggtgaagatgggaagttcatccaaaggacaggggagtgaggcg
gcgaagagtggaaaaaagcggcgaagaacttga
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