Populus trichocarpa (black cottonwood): 18100762
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Entry
18100762 CDS
T01077
Name
(RefSeq) uncharacterized protein LOC18100762 isoform X2
KO
K14416
elongation factor 1 alpha-like protein
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
18100762
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
18100762
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
18100762
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP_EFTU_D3
GTP_EFTU_D2
MMR_HSR1
GTP_EFTU_D4
zf-RanBP
Vps36-NZF-N
Motif
Other DBs
NCBI-GeneID:
18100762
NCBI-ProteinID:
XP_006382170
UniProt:
U5GEV8
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All DBs
Position
6:complement(26696179..26702201)
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AA seq
671 aa
AA seq
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MPRKGNYGFDYDDYDDYDYDYDVEDQVEAPEPKKKTSSDKVRVWSCPICTYDNDESMSAC
DICGVIRSSVPGKLKDDKGTAPFKFDFPSPDDMVSKGLRSSKIGSKANLINSRSQNASAG
ISETVKSSDKSSASIPKGKQGRPGVDEGNHNKNGVVDTQSRDEISDSTSSLMPKAKDKSV
GYSSSSINGGKSLGLTSNLNDMSLSDKSGNSNKASAKRPKSSAQYQPDKWMLPDKSENAL
TQLNLAIVGHVDSGKSTLSGRLLHLSGRITQKEMHKYEKEAKLQGKGSFAYAWALDESPE
ERERGITMTVAVAYFDSKKYHVVVLDSPGHKDFVPNMISGATQADAAILVIDASIGGFEA
GMDSKGQTREHARLIRSFGVDQIIVAVNKMDSVEYSKDRFDLIGTQLGTFLRSCGFKDSL
VSWIPLSAVENQNLVAAPSDVRLSSWYHGSYLLDAIDSLQPLKRDFSKPLLMPICDVVKS
SSQGQVSACGKLEAGALRSGLKVLVMPSGDVGTVRTLERDSQICAVARAGDNVTVSLQGI
DGSNVMAGGVLCHPDFPVAVAKHFELKVLVLDFLTIPIVIGSQLEFHIHHAKEAARVVKI
ISVLDPKTGKVSKKAPRCLTSKQSAIIEVALDGPVCAEEFTNCRALGRAFLRTLGKTVAV
GIVTRIIEDQE
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgtaaagggaattacggatttgattatgatgattacgacgattatgactatgac
tatgatgtagaagatcaagttgaagcacctgagcctaagaaaaaaacgagtagtgataag
gttcgggtatggagttgcccgatttgcacttatgataatgatgagagtatgtctgcatgt
gatatttgcggtgttattcgaagttctgtccctggaaaactcaaggatgacaagggaaca
gctcctttcaagtttgatttcccatctccagatgacatggtttctaaggggctacgatcc
tccaaaattggatctaaagccaaccttattaactccagatctcaaaatgcatctgctggc
atttctgagactgttaaaagttcagataaatcatctgcctcaatcccaaaaggcaaacaa
ggcaggcctggtgttgatgagggcaatcataacaagaatggcgtagttgacactcaatca
agggatgaaatttcagatagcacatcttcattgatgccgaaggccaaagataaaagtgtt
ggttatagcagttcttcaataaatgggggcaagtctcttggtcttacaagtaatttgaat
gacatgtctttgtctgataaatctggaaactcaaataaggctagtgccaagaggcctaag
tcatctgcacaatatcaacctgataaatggatgctcccagacaaatcagaaaatgctttg
acacaactgaatcttgctattgttggccatgttgattctggcaaatcaacactctcaggt
agactgctacatctttcgggacggataacccaaaaagaaatgcacaaatatgaaaaggag
gccaagttacagggcaaggggtcattcgcttatgcttgggcattggatgagagtcctgaa
gaaagggaaaggggaataactatgacagtcgctgttgcttattttgattccaaaaaatat
catgttgttgtgcttgattccccaggccataaagactttgtcccaaacatgatatctggc
gcaacacaagccgatgctgccatccttgttatagatgcctccattgggggttttgaagct
ggaatggacagcaaagggcaaactagggaacatgcacgtcttattagaagttttggggtt
gaccaaatcattgtcgcagttaacaaaatggactcagtagagtactccaaagaccgattt
gatttgattggaacacaacttggaacatttcttcgttcttgtggattcaaggattccttg
gtgtcatggattccgttgagtgcagtggaaaatcaaaatttagttgcagctccttctgat
gttcgtttatcatcctggtaccatggatcttatctgttggatgcaattgattctcttcag
ccactgaagagagatttctcaaaacctcttctcatgcccatatgtgatgtagttaaatca
tcttcacaagggcaggtgtcagcctgcggtaaactggaggctggtgctcttcggagtgga
ttgaaggttttagttatgccatcaggagatgtggggacagtacgcaccctagaacgggac
tctcagatttgtgcagtcgcaagagcaggagataatgtgactgtcagtctccaaggcatt
gatggaagtaatgtgatggctgggggtgttctatgtcatcctgactttcctgttgcagtt
gcaaaacattttgagctgaaagtgctcgtcttagattttttgacaatcccaattgtcatt
ggctctcaattggaattccacatacaccatgcaaaggaggctgcaagagttgttaaaata
atatcagtgcttgatccaaagaccggcaaggtgtcaaagaaggcacctcgctgtcttacc
tcaaagcagagtgccataatcgaggtggctttggatggaccagtttgtgcggaagagttc
acgaattgcagggctcttggaagggcctttttgagaacattagggaaaaccgttgccgtc
ggaattgtaacaaggataattgaggatcaggaatag
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