Populus trichocarpa (black cottonwood): 18100965
Help
Entry
18100965 CDS
T01077
Name
(RefSeq) uncharacterized protein LOC18100965 isoform X1
KO
K15559
regulator of Ty1 transposition protein 103
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pop03021
]
18100965
Transcription machinery [BR:
pop03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
18100965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
CTK3
DUF1598
THOC7
TEX13
LepA_C
Motif
Other DBs
NCBI-GeneID:
18100965
NCBI-ProteinID:
XP_024461674
LinkDB
All DBs
Position
7:complement(11174935..11190923)
Genome browser
AA seq
523 aa
AA seq
DB search
MDSVFSEEILADKLSKLNGTQQCIETLSHWCIFHRSKAESVVETWDKQFHNSDMLQKVPL
LYLANDILQNSKRKGNEFVKEFWKVLPAALKNVVEKGDDRGKKAVSRLVNIWEERKVFGS
RARSLKEVILGEDAPPPLELNKKRSRSVKITKRDSRSTRTKLSIGGDAEKIVSAFHLVVS
EQPNEETEMSNCKSSVRRVRKMEKDVDVACSGNDKDPKRKTLAKELEDEENLLKQSIEKL
RSIEASRVALVSLLKEALHEQESELEGVQTQMQVAQAQVEEASNMRRRLNGEEYVSKAST
ATTVSVDSNAKAGQTPKRTAADIAAEVAEKLAASSSSQMIMHSVLSSFAAEEAKNAQLTK
AYDSLSKPENSLPVSDPNVFMPAQPLAAPTTHSYQSVLLPQPSMQNQTPSAQAQFHMLPN
QSSQQYLQPAGGIMTPYAYGNISPLPPGPPPPPPPPPPYMVSPMVSMAQQPSQIPQQQPL
PLAQQQATINQQQQMSLNQQPQGPNFRPLRPHGMVYYGHPSHS
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atggatagtgtatttagtgaagagatacttgcagataagctttctaagctcaatggcacc
cagcagtgcattgaaactttgtcccattggtgcatctttcaccgaagcaaagcagaatca
gttgtagagacatgggataaacagttccacaactcagatatgctccagaaagttcctcta
ttgtatcttgcaaatgacatcctacagaacagtaagcggaaaggaaatgaatttgttaag
gagttttggaaagttcttcctgctgcgctaaaaaatgtagttgagaaaggtgatgaccgt
gggaagaaggcagtctctagattggtaaatatatgggaagaaaggaaagtatttgggtca
cgtgcccggagcctcaaagaggtaattcttggagaagatgcacctccacccttggagctc
aacaaaaaacgttcacgctccgtcaaaattacaaaacgagattcacgatccactagaacg
aaattgtccatcggaggcgatgctgaaaaaatagtatcggcatttcatttggtggttagt
gagcaacccaatgaagagacagagatgagtaattgcaaatcttcagttcgtcgtgtgagg
aagatggagaaagatgttgatgttgcctgtagtggtaatgataaagatccaaaacgaaag
actttggccaaggaactagaggatgaagagaatcttttgaaacaaagcattgagaaactt
agatcaattgaagcaagtagagtagcacttgtgtctctgttaaaagaagctctacacgaa
caggaatctgaattggagggagttcaaactcagatgcaggttgctcaggcacaggtagag
gaagccagcaacatgcgaaggcggcttaatggtgaagaatatgtgtcaaaagcatctact
gcaacaacagtatcagttgattcaaatgcaaaagcaggacaaacacctaagaggacagct
gctgatattgctgctgaggttgcagaaaagcttgcagcttcctcatcttctcaaatgatc
atgcactctgttctctcttcgtttgctgctgaagaagcaaagaatgctcaattaacgaag
gcctatgattcattgtcaaaaccggaaaactcattgcctgtttcagatccaaatgttttt
atgccagcccaaccacttgctgctccaacaacacactcgtatcagtcagttttgctgccc
caaccttcaatgcagaatcagactccaagtgctcaagctcagtttcacatgcttcccaac
caatcctctcagcaatatttacagccagcaggagggattatgaccccatatgcttatggt
aacatttctcccttgcctccaggaccacctccaccaccacccccacccccaccctatatg
gtaagtccaatggtgtccatggcgcaacaaccatcacaaatacctcagcagcaaccgcta
ccattggcacaacagcaggccacaataaaccagcaacaacaaatgtctttaaaccaacaa
ccccagggtcctaatttcaggcctctgcgaccacatggaatggtgtactatggccaccct
tctcattcttag
DBGET
integrated database retrieval system
