Populus trichocarpa (black cottonwood): 18102016
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Entry
18102016 CDS
T01077
Name
(RefSeq) chromatin modification-related protein eaf-1
Organism
pop
Populus trichocarpa (black cottonwood)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf_UBZ
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_2
Motif
Other DBs
NCBI-GeneID:
18102016
NCBI-ProteinID:
XP_006379033
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Position
9:complement(4806792..4819105)
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AA seq
1317 aa
AA seq
DB search
MGFDNECIPNIQSLSGEYFCPVCRLLVYPNEALQSQCTHLYCKPCLTYVVSTTRACPYDG
YLVTEADSKPLIESNNVLAETIGKITVHCLYHRSGCPWQGPLSECTSHCSGCAFGNSPVV
CNRCGIQIVHSQVQEHAQNCPGVQPQAQPAEGAQDATSTGAPTTGDQAQAAIQTGTTTPQ
AQTSMTSTPGKDTTQQINATTQAQTAVQAAVPTAEQWYQQQQQYQQYYQQYPGYDPYQQH
YQQYYPYQQQAVSQYQQPQVSMHAQVPQPQLQTQPQPQVPVAAQPQNQVQVNPQQQTHLT
VQQQSLTQLQAHPPAHGYPPPQAQSNPQPHPIQPLPQHVPQYQHPQLQVQHPQPQIQAQT
NSQLHPQKHPVPQPHVQAQPQTLQPLPQSLASQPSQTVNPNLQTQPQHSSVNAVTGHHSY
QQPQIHQQMQTGALKHSQGGPQPHSQQPVQMQSQFPQQSSLWPQPQYHAAVQNLQQPGLL
PSQGQVPNIPPALQQPIHSHAHQPGLPVQQRPGMQPTPQPMHQQYAQHQQPFSGQPWGAV
HNQAHQQGPYVQQQQQQLHPLTQLRPQGLPQSFQQPSHAYPHPQQNVLLPHGAHPHQAKS
LAVGPGLPAQSYPQSASGMQVRSIQIGANQQSGNILKTNNQVELSSDQQSGVSSRQRQGD
IEKGAEGELSAQKTIKKELNDLDAGLAADASEMKTIKSESDLKQVDDKNKPTGEAKDVPE
SLAAANGESSIKQVKEEHRDGADEQNDVSNADHEKVELSVSEHKDGPLLETAPSHLEEQI
MKLQKDKTPTYQSFGGFPPNGHVQSQSVSAVDQGKLEPLPIHHGPSAAQQRPVGPSLVQA
SPLGPPHHMQLPGHPPTQHGRLGPGHVPSHYGPPQGAYPHAPAPPSQGERTPSHVHEATM
FANQRPKYPDGRQGTYSNVVGMNGAQGPNSDRFSSLPDEHLNPFPRGPAHHNVHQGEFEE
DLKHFPRPSHLDTEPVPKSSSHFPSSRPLDRGPRGFGVDGAPRPLDKGSHGFNYDSGLNM
EPLGGSAPPRFFPPYHHDKALHPSDAEVSLGYHDSLAGRSDFARTRPGFLGPPIPGYDHR
HMDNLAPRSPVRDYPGMPTRRFGALPGLDDIDGRDPHRFGDKFSSSLRDSRFPVFPSHLR
RGELEGPGNLHMGEHLSGDLMGHDGRPAHLRRGEHLGPRNLPSHLWVGEPGNFGAFPGHA
RMGELAGPGNFYHHQLGEPGFRSSFGGNYAGDLQFFDNSRKRKPSMGWCRICKVDCETVE
ALDLHSQTREHQKMALDMVVTIKQNAKKHKSTPSHHSSLEDKSKSRNASFEGRGNKH
NT seq
3954 nt
NT seq
+upstream
nt +downstream
nt
atgggatttgataatgagtgcatacctaacattcaatctctttctggagagtatttttgt
cccgtttgtcgccttcttgtgtacccaaatgaagcattacaatcacaatgcactcacttg
tactgcaaaccctgtttgacatatgtcgtcagcactacccgagcctgcccctatgacggc
taccttgtgacagaagcagattccaagcctcttattgaatcgaacaatgtacttgctgaa
accattggcaagataactgtccattgtttatatcataggagtgggtgcccctggcagggt
cctctgtctgagtgcacatctcattgctcgggatgtgcctttggtaattctcctgtagtt
tgcaacaggtgtggaattcaaattgtgcatagtcaagtgcaggaacatgctcaaaattgt
ccaggtgtgcagcctcaagcgcaacctgctgagggtgcccaagatgcaacaagcacaggc
gcaccaactactggtgatcaggctcaggctgccattcaaacaggaacaacaactccccag
gctcaaacttctatgacctcaactcctggaaaagataccacccaacaaatcaacgcaact
acccaggcccagactgcagtacaggctgcggtgcccactgcagaacagtggtatcaacag
caacagcaatatcagcagtactaccagcagtatcctggatatgacccgtatcaacagcat
tatcagcagtactatccatatcaacagcaagcagtttcacaataccagcaaccacaggtg
agcatgcatgctcaagtcccccaaccccagctgcagacccaacctcaacctcaagtaccc
gttgctgctcaacctcagaaccaggtacaagtgaatccacagcaacaaactcaccttaca
gttcagcaacaatctctgacccaactgcaggcacatccaccagcccatggctatccacct
cctcaggctcaatccaatccacaaccccaccctattcagcctcttccacagcacgtgcct
caatatcagcatcctcaattgcaggtgcagcatccacagccccaaattcaggcacagact
aattctcagcttcaccctcaaaagcatcctgttcctcaaccccatgtacaagctcagcca
caaacactccagccccttccacaatccctggcttctcagcccagccagactgttaatcct
aatctccagacccagcctcagcattcttcagtcaatgcagtgacaggccatcattcttat
caacagccccagattcaccaacaaatgcagacaggagccctaaaacactctcaaggtgga
cctcaacctcattcacaacagcctgttcaaatgcagagtcagttccctcaacaatcatct
ttatggcctcagccacaatatcatgctgcagttcaaaacctgcagcaaccaggtttgctg
ccttcacaaggtcaagtcccaaacattcctcctgcactacaacagccaattcattctcat
gcacatcaacctggacttcctgttcaacaacgtcctggtatgcagccaactccgcaacca
atgcatcagcaatatgcacagcaccagcagcctttttctgggcaaccatggggtgcagtt
cacaatcaagcacatcagcaaggtccttatgtgcagcagcagcagcagcagctgcatcca
ctgactcaactacgcccccaaggattaccccagtcattccagcaaccttctcatgcctat
ccacatccccagcaaaatgttctattaccgcatggtgcacatccccatcaagctaaaagt
cttgcagtagggcctggattacctgcacagtcatatccacaatctgcctctggtatgcag
gtcaggtcgattcagattggtgcgaaccagcaatctggaaatattcttaagacaaataac
caagttgaattatcttctgaccaacaatcaggggttagttctagacaaaggcaaggtgat
attgagaaaggtgcagaaggtgagttgtctgctcaaaaaactattaaaaaggaattaaat
gatttggatgctggtcttgcagctgatgcaagtgagatgaaaaccataaaatctgaaagc
gacttgaagcaagtggatgacaaaaataaacccacaggtgaagctaaggatgttccagaa
tcacttgcagcagcaaatggagagtcttcaattaagcaggtgaaagaagagcatagagat
ggtgctgatgagcaaaatgatgtttctaatgctgaccacgaaaaggtggagctctctgtt
tcagaacacaaggatggtcctctgctggaaactgccccgtctcaccttgaagaacaaatt
atgaaattgcagaaggacaaaactccgacttatcaaagttttggaggctttcctccaaat
ggtcacgtgcaatctcaatcagtttcagctgttgaccagggaaagctagagcctcttcca
attcatcacgggccctctgctgctcaacaaaggcctgttggaccttcattggtgcaagca
tctcctcttggacctccacatcacatgcaattgcctgggcatcctccaactcaacatggg
cgtttaggtcctggacatgtaccaagtcattatggtcctcctcaaggggcctatcctcat
gcacccgcacccccatctcaaggtgagcgaactccttcacatgtccatgaagccaccatg
tttgcaaatcagaggccgaaatatccagatggtagacaaggcacgtactcaaatgtggtg
ggaatgaatggggcccaaggccctaattcagataggttcagctctttaccagatgagcat
ttgaatccctttccacgtggcccagcacatcacaatgttcatcaaggagagtttgaagaa
gatctgaagcatttccccaggccctctcatttggacaccgaacctgttccaaaatctagt
agtcactttccctcatccagacctcttgataggggtcctcgtggttttggtgtggacgga
gcaccaagacctcttgacaagggatcccatggttttaattatgattcagggttgaacatg
gaaccactgggtggctctgctcctccaagattctttcctccctatcatcatgataaagca
ttgcatcccagtgatgcggaagtatcattaggttatcatgacagtctagcaggccgatct
gattttgctcgaactcgtcctggttttcttgggccccctattcctggatatgatcaccgt
catatggataatttggcaccaagaagtccagttagggattaccctggcatgcctacacgg
agatttggtgcccttccaggcctagatgatattgatggcagagatccacaccgatttggt
gataaattttctagttctcttcgtgatagtaggtttccagtttttcctagccatttgcgc
aggggtgagcttgagggtcctggtaatttgcacatgggtgagcatttgagtggtgatttg
atgggacatgatggtcggcctgcccatttgcggaggggtgaacatttgggtcctcgtaac
ctgcctagtcatttgtgggtgggagagccaggtaactttggtgctttccctggtcatgca
cgaatgggagaattggctgggccagggaacttctatcatcatcaacttggtgagcctgga
tttagaagcagctttggtggaaactatgcaggcgacttgcagttttttgataattctaga
aagagaaaaccaagcatgggatggtgtcgtatatgtaaagttgactgcgaaacagttgaa
gccctggacttgcattcacaaacgagggagcaccaaaagatggctctagatatggttgta
accatcaaacagaatgcaaagaagcataaatcaactcccagtcatcattcctcacttgaa
gataaaagcaagtcaaggaatgcaagtttcgagggacgtgggaataaacattaa
DBGET
integrated database retrieval system
