Populus trichocarpa (black cottonwood): 18102806
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Entry
18102806 CDS
T01077
Name
(RefSeq) KH domain-containing protein HEN4 isoform X2
KO
K21444
poly(rC)-binding protein 3/4
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
18102806
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Other mRNA localization factors
18102806
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Gene cluster
GFIT
Motif
Pfam:
KH_1
KhpA-B_KH
KH_2
KH_5
Motif
Other DBs
NCBI-GeneID:
18102806
NCBI-ProteinID:
XP_006378862
UniProt:
U5G2T3
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All DBs
Position
10:complement(22408315..22412465)
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AA seq
640 aa
AA seq
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MDTPPITPTKRSQTEPTQIRILCPSLKTGAVIGKGGSTVRHIQSLTGAKIRLLDDPHIPY
CEDRIILITLNSGKVPKSDDSNNATSDHNKEDANDGECSSGGGGGEEEGWGPVKKAVVRV
FEKIVKGDSEEELSEAVVVTCKVLIGSGGSNQGGSFSKVLEKIRVESGAQVRVSNREQIP
ACASPGDELILITGSFSAVKKALLSVSSCIQDSPRAETANFGAAGFHGNAMPAQGDLHQW
GYGPGNHAADYHPRGYSPNFEEDVVFRLLCQADKVGSLIGKGGSVVRALQNETGASIKIA
EGVSDSDERVVVISARENSEQRHSPAQDAVIRVQSRIAEIGFERGARIVARLLVHPQQIG
VLLGKGGKIINEMRHVTGASICIFPKEQASKYGSQTEEVVQVLGSLQAVRDALFQITSRL
RDTIFPVKPPFSNTAPLPYPPPPFPEMHPPQFRPRPNPTSPGPYPSPVGPFQGMDRSAIP
SHPLDHQPPFSYGMDRSGPPNLDRAPYSYGSDRPGHGPPFESSPRSWTAQPFSNGNLRGG
ADLGSGSVARNGHPASGNLAPSMAGTSVEVIIPQKLLTHVYGESNSNLTQIRQISGANVL
IHDPKPGATEGLVVVSGTSDQMRAAQSLIHAFILYGQTIH
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atggacactcctccaataactcccaccaaacgctcccaaaccgaacccacacaaatccgg
atcctctgcccgtcactaaaaaccggcgccgtcatcggcaaaggcggctccaccgtccgt
catatccaatctctcaccggcgccaaaatccgcctccttgacgaccctcacattccctat
tgcgaagaccgcataatcctcattaccctgaacagtggcaaggtccccaaatcagacgac
tccaacaacgccacctccgatcacaacaaagaagatgccaatgacggagagtgcagttct
ggtggtggtggtggtgaagaggaggggtggggtccagtgaagaaagcggtggttagggtt
tttgagaagatagtgaaaggggacagtgaggaggagttgagcgaagctgtggtggtgacg
tgtaaggttctgattggtagtggtggtagtaatcagggagggagtttctctaaggttttg
gagaaaattagagtggagagtggagcgcaagttagggtttcgaatcgcgagcaaattcct
gcttgtgcttctcctggtgatgaattgattctgattactggaagtttttcagctgttaag
aaagcactcttgtctgtttcgagttgtattcaagatagcccgagagcagaaactgccaat
tttggtgcagcgggattccatggaaatgctatgcctgcgcaaggtgacttgcatcagtgg
ggttatggacctggtaatcatgctgcagactatcatccaagagggtattctcctaatttt
gaagaggacgttgtatttaggctgttatgccaggctgataaagttggcagtttgataggg
aaaggtggctctgtagtacgggctttgcaaaatgagacgggtgcatctatcaaaattgct
gaaggtgtatctgattcagatgaacgtgtggttgtcatatctgcaagagagaattcagaa
caaagacattctcctgctcaggatgctgttattcgtgtgcaatccagaattgcagagatt
ggatttgagcgtggtgccagaattgttgctcggcttcttgtgcatccacaacagataggt
gttttgttgggtaaaggaggcaagatcataaatgaaatgagacatgttactggtgctagt
atatgcatatttccaaaggagcaagcttcaaagtatggttctcaaactgaagaagtagtt
caggttcttggcagcttgcaagctgtacgggatgctctatttcaaataacaagcagactt
cgggacactatatttcctgtgaagccaccattctcaaacactgctcccttgccttatcca
ccacccccatttccagaaatgcatccccctcagtttaggccaagacctaatcctacctct
ccaggtccttacccttctcctgttggacctttccaaggcatggatcgttctgctattccc
tcccaccccttagaccaccagcctccattttcatatggtatggatcgcagtggtccacca
aatttggaccgagctccctattcatatggtagcgatagaccaggacatggtcctccattt
gaaagttctccaagatcatggactgctcagccatttagcaatgggaacctaaggggaggt
gctgatctaggttctggctcggttgcaagaaatgggcatcctgcaagtggaaatctagca
ccgagtatggctggcacatctgttgaggttatcattcctcaaaaactgctgactcatgta
tatggagagagtaatagtaatttgactcagatcagacagatttcaggtgcaaatgttctc
attcacgacccaaagcccggggcaaccgaaggtttggtggtagtgtctggaacatcagat
caaatgcgtgctgcacagagcctaatccatgcctttattctttatggacagacaattcat
tga
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