Populus trichocarpa (black cottonwood): 18105154
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Entry
18105154 CDS
T01077
Name
(RefSeq) nuclear pore complex protein NUP62 isoform X1
KO
K14306
nuclear pore complex protein Nup62
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
18105154
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
18105154
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
18105154
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Nsp1_C
Nucleoporin_FG
ATG17_like
Motif
Other DBs
NCBI-GeneID:
18105154
NCBI-ProteinID:
XP_006375247
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Position
14:3617252..3623741
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AA seq
839 aa
AA seq
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MSGFPFSSSSTQSSPFSPVTGFSFGSSPAPSTTNTPPSFGSNTSAPATGFSFGSSSAPFT
TTAPPSFGSNTSSAPATGFSFGSSSAPSTTTAPPSFGSNTSSAPATGFSFGSSSAPSTTT
APPSFGFNTSSAPSLSFSSSNTFTSAPSSTLSGSSASTSSPFSFATASSSTSTTPSLFGS
LSAASISPNPLFGSASSSTANASSSFGTTTSSSSAPAPSPLFGTSTGSSLFGTTSSSPLF
GSTSSTATSATPLFGTSSPSPLFGSTSSTTTSASPLFGTSSPSPLSGSTSSTTTSASPLF
GTSSPSPLSGSTSSTTTSASPLFGTRSPAPLFGSTSSTATSASPLFGTGASSTPSSFGTP
SSASSTGSSLFGNSLSTTSSAPSLFGSSSSSTASTTSTTTNLYGSSSSFSNASSAPSFSA
GFSFPKTTTASAPTTASTAAIASTPAPSTTTSFSFGTQPSAPSQPSLFGNAASSSSVKST
TVSPLFSTVTTTTASTPASGATEVTSTSTSSTTSGLSLPAFGMTPGTTAGTGAAASSGSA
GFSFSGFPSATTSVAASSGTTASSFTGFSLSSISPAPTSKSQTQPASSSAPLLSVPASTA
APTTTSSTTAQTSSLGVASTSGTSSSVSTALTATPKLPSEITGKTVEEIIKEWNSELQER
TGKFRKQATAIAEWDKRILQNRDVLLRLEIEVAKVVETQANLERKLELIETHQQEVDKAL
QSIEEEAERIYKDERGSLLDDEAASTRDAMYEQAEFIEREMEQMTEQIKSVIQTVNANQG
GELDAIDGMTPLDMVVRILNNQLSSLMWIDEKAEEFSSRIQKLANQGSAADRQFLGLKF
NT seq
2520 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggcttccccttctcctcttcctctacacaatcctcccctttctcccctgtcacc
ggattctcattcggatcttcccccgctccctccaccaccaatacacccccctccttcggc
tccaacacctccgcccctgccaccggattctcattcggatcttcctccgctcccttcacc
accaccgcacccccctccttcggctccaacacctcctccgcccctgccaccggattctca
tttggatcttcctccgctccctccaccaccaccgcacccccctccttcggctccaacacc
tcctccgcccctgccaccggattctcatttggatcttcctccgctccctccaccaccacc
gcacccccctccttcggcttcaacacctcctccgccccttccttgtccttttcctcctct
aataccttcacctccgctccctcttccaccctgtctggctcatcagcttcaacttcttcc
ccattctcctttgcaacagcctcatcctccacaagtacaactccatccctgtttggctct
ctctctgccgcctccatttcccctaatcccttgtttggctccgcttcttcttctacggca
aacgcaagttcctcctttggcacaactacttcatcatcatcagcacccgccccttcgcct
ctgtttggaacaagtacaggctcatccttgttcggaacaacttcatcctcgcccttgttt
ggctcaacttcctccaccgcaacttccgctacgccgctgtttggcacaagctcaccctcg
cccttgtttggctcaacttcctccacaactacttccgcttcgcctctgtttggcacaagt
tcaccctctcccttgtctggatcaacttcctccacaactacttccgcttcgcctctgttt
ggcacaagttcaccctctcccttgtctggatcaacttcctccacaactacttccgcttcg
cctctgtttggcacacgttcacccgctcccttgtttggatccacttcctccacagctact
tccgcttctcctctgttcggaacgggtgcctcttctactccatcctcattcggtacacct
tcatccgcatcaagtacaggttcatcgttgtttggcaactctctgtccaccacaagttct
gcaccgtctctgtttggatcatcatcatcatctactgcttccaccaccagcacgactact
aatttgtatggttcttcatcttctttctctaatgcaagctctgctccaagcttctctgcc
ggattttctttcccaaaaaccactacagcttcagcaccgactactgctagtactgctgct
atcgcatccacgccagctccttcaacgacaacttctttctcgtttgggacgcagccatca
gcgccttcacaaccttcattatttggcaacgcagcctcttcgtcatcggtgaaatccaca
actgtatcgccgttgttttctacagttactactacaactgcttctactccagctagtggt
gctactgaagttacttctactagtactagcagtactacttcggggttgagtttgcctgca
tttggtatgactccaggaactacagctgggacaggtgctgctgcttcttctggctctgcg
gggttttctttttcaggttttccttctgctacaactagtgtggctgcgtcttcagggact
actgctagctcgtttactggattttcattgtccagcatatcaccggcgcctacttcaaaa
tcacaaactcaaccggctagtagttctgcgcctctactcagtgtccctgcttcaactgct
gcacctacaacaacttccagcactactgctcagacatcatcgcttggtgtggcttccact
agtgggacaagttcaagtgttagcactgccttaaccgctacaccaaaattgccgtctgag
attacagggaagactgttgaggagatcatcaaagagtggaattctgagctgcaagagcgt
actgggaaatttcggaagcaagctactgccatagctgagtgggataaaaggatcttgcaa
aatcgtgatgttcttcttcggctggagattgaagtggcaaaagtggttgagacccaagct
aatttggagcgaaagttggagttaattgagactcatcaacaggaggttgacaaggctttg
caaagtatagaagaagaagctgaacgtatttacaaggatgagcgtggatcgcttcttgat
gatgaagctgcatcgactagagatgctatgtatgagcaggctgaatttatagagagggaa
atggaacagatgacagaacagataaaatcagtaattcagaccgtcaatgccaaccagggt
ggtgaacttgatgcaattgatgggatgactccattggacatggttgtccgaattctcaac
aatcaactaagttctttaatgtggattgatgagaaggctgaagagttttcttcacgtatt
caaaagcttgctaaccaaggttctgctgctgatcgacaatttttgggtttaaaattttga
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