Populus trichocarpa (black cottonwood): 18105620
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Entry
18105620 CDS
T01077
Name
(RefSeq) protein argonaute 1-like
KO
K11593
eukaryotic translation initiation factor 2C
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
18105620
03036 Chromosome and associated proteins [BR:
pop03036
]
18105620
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
18105620
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
18105620
RNA interference (RNAi) pathway
RITS (RNA-induced transcriptional silencing) complex
18105620
microRNA pathway
RISC loading complex
18105620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Piwi
ArgoN
PAZ
Gly-rich_Ago1
ArgoL1
ArgoL2
ArgoMid
Motif
Other DBs
NCBI-GeneID:
18105620
NCBI-ProteinID:
XP_024442403
LinkDB
All DBs
Position
15:2229538..2237335
Genome browser
AA seq
1072 aa
AA seq
DB search
MVRKRRTELPRSGGESSESQETGAGRGAQPPAERSGPPQQGGGGGGYQGGRGPQSQQVGR
GGGYGGGRGRGGMQQQHYGGAPEYQGRGRGQPQHGERGYGSGRSGGGRGGPPSGGPFRAP
APELHQATPAPYPAGMTPQPMPSEARSSMPMLSEASSSMQPLEPSPAAVSQQMQQLSIQQ
EGSSSQATQPPPASSKSMRFPLRPGKGSTGIRCIVKANHFFAELPDKDLHQYDVSITPEV
SSRGVNRAVMAQLVKLYQESHLGKRLPAYDGRKSLYTAGALPFQAKEFKIILIDEDDGTG
GQRREREFKVVIKFAARADLHHLGLFLQGKQADAPQEALQVLDIVLRELPTARYCPVGRS
FYSPDLGRRQSLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVTQLLNR
DVSSRPLSDSDRIKIKKALRGVRVEVTHRGNMRRKYRISGLTSQATRELTFPVDERGTLK
SVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLK
VTCQRPQERERDIMQTVYHNAYHNDPYAKEFGIRISEKLASVEARILPPPWLKYHDTGRE
KDCLPQVGQWNMMNKKMVNGGRVNNWICINFSRTVQDSVARGFCYELAQMCHISGMDFAL
EPLLPPVGARPEQVERVLKTRYHDAMTKLQPHSKELDLLIVILPDNNGSLYGDLKRICET
DLGLVSQCCLTKHVFKMSKQYLANVALKINVKVGGRNTVLVDALSRRIPLVSDRPTIIFG
ADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWQDPVRGTV
SGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLHELDAIRKACASLEPNYQPP
VTFVVVQKRHHTRLFANDHRDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGT
SRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEP
ETSDSGSLTSGMASGRGGGGAGGRATRGPAANAAVRPLPALKENVKRVMFYC
NT seq
3219 nt
NT seq
+upstream
nt +downstream
nt
atggtgaggaagaggagaacggaacttccacgaagtgggggtgagagttctgagtcccag
gaaactggtgctggtcggggtgctcagcccccagctgagaggagcggtcctcctcaacag
ggaggaggtggaggaggataccaaggtggaaggggtccccagtctcagcaggtaggccgt
ggaggtggttacggtggcggccgaggaaggggaggaatgcaacaacagcattatggtgga
gctccggaataccagggacgggggagagggcaacctcagcatggagaacgaggttatggc
agtggtcgtagtggaggtggccgaggaggacccccttcaggcggaccatttagagcacca
gcacccgagctgcaccaagctactccagctccttacccagctgggatgacccctcagccc
atgccatctgaggcacgttcttcaatgcccatgctgtctgaggcaagttcttcaatgcaa
ccactagagccatcaccagcggctgtgtcacagcagatgcaacaactatcaatccagcaa
gaaggctcttctagccaggcaactcagccaccgccagcctcaagtaaatcaatgaggttc
cctcttcggcctgggaagggaagcactggcataaggtgtattgtaaaggctaatcacttt
tttgctgagctaccagacaaggatttgcaccagtatgatgttagcattacaccggaggtt
tcatcaaggggtgtcaatcgagctgtaatggcacaactggttaaattgtaccaggaatcc
catctcggaaagcgtcttcctgcatatgatggacgtaagagtctttatactgctggggct
cttccttttcaagcaaaggaattcaaaatcatcctcattgacgaggatgatggaacaggc
ggacaaaggagagagagggaattcaaagttgtcatcaaatttgctgctcgtgctgatctg
caccatctaggactctttttgcagggaaagcaagctgatgcacctcaggaagcccttcaa
gtccttgatatagtgctgcgtgaattgccaactgctaggtactgcccggtgggtcgatca
ttttattcccctgatctaggaaggagacagtctcttggtgagggcttggagagttggcgt
ggtttctatcaaagtattcgtcctacacagatgggactctcactcaatattgatatgtcc
tcaactgcattcattgagccactaccagttattgattttgtgactcaattattgaatcga
gatgtttcctccagaccgttgtctgattctgatcgtataaagattaaaaaggctctcaga
ggtgtcagagttgaagttacacaccgtggaaatatgcgcagaaagtatcgtatatctggt
ttaacatcacaggcaacacgggagctgactttcccggttgatgaaagaggaacattgaaa
tctgttgtggagtatttttatgaaacctatggctttgtaattcaacatactcaatggcct
tgtctacaagtgggaaatcaacagagacctaactatttgcctatggaggtttgtaagatt
gttgagggtcagaggtactccaaaagattgaatgaaagacagatcactgcgttgttgaag
gtgacttgccaacgtcctcaagaaagggaacgagatatcatgcagacggtttatcacaat
gcatatcacaacgatccttacgccaaggagtttggtataagaattagcgagaagcttgct
tcagttgaagctcgcattctgcctcctccatggctcaagtatcatgatacaggcagggag
aaagattgtcttcctcaagttgggcagtggaacatgatgaataagaaaatggttaatgga
ggcagagtcaataattggatttgcatcaatttttcaaggactgtccaggacagtgtggcc
cgaggattttgctatgagcttgcacaaatgtgccacatttctggcatggactttgctctt
gagccattgcttcctcctgttggtgctcgtcctgagcaagtagaaagggttttgaaaacc
cgataccatgatgcaatgacaaaactccagccacatagcaaggaacttgacttgctcatt
gtgattctcccggataacaatggttctctttacggtgatttgaagcgaatttgtgagaca
gatcttgggcttgtttctcagtgctgcttgacaaagcatgtattcaaaatgagcaagcaa
tatctggccaatgtggctctgaagataaatgtgaaggttggaggaaggaatactgttctt
gttgatgcattatcaagacgtattcctctagtcagcgaccgacctactattatttttggt
gctgacgttactcatcctcatcctggggaggactcaagcccatccattgcagctgttgtg
gcttctcaagattggccagaggttactaagtatgctggcctggtttgtgctcaagcccat
cgccaagagcttatccaagatttatataaaacatggcaggatcctgtacgagggacagtg
tctggtggcatgatcaaggaacttctcatatctttccggagagccacagggcagaagcct
cagagaattatattctacagagatggtgtcagtgaagggcagttctatcaagttttgttg
cacgaacttgatgcaattcgtaaggcatgtgcttctttagagcccaactaccagcctcca
gtgacatttgttgtggttcagaagcgtcatcacacaaggctgtttgcaaatgatcaccgt
gaccgtaatgctgttgaccggagcgggaatatattgcctggtactgttgtggactcaaaa
atttgtcacccaacagagttcgacttctatttgtgtagtcatgctgggattcagggtaca
agccgtccagctcattaccatgtactttgggatgagaacaagttcactgctgatgggttg
cagtctcttacaaacaatctttgctacacatatgcaagatgcacgcgttctgtttccatt
gtgccacctgcatactatgcacatcttgctgcattccgagctcgtttctacatggaaccg
gagacatcagacagtggatcgcttacaagtggcatggcttctggacgaggaggtggagga
gcaggtggtcgagccactcgcggacctgctgccaatgctgctgtgaggcccctgcctgcc
ttgaaggagaatgtcaagcgggttatgttctactgttag
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