Populus trichocarpa (black cottonwood): 18106453
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Entry
18106453 CDS
T01077
Name
(RefSeq) E3 ubiquitin-protein ligase SINA-like 7
KO
K04506
E3 ubiquitin-protein ligase SIAH1 [EC:
2.3.2.27
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
18106453
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pop04121
]
18106453
Enzymes [BR:
pop01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
18106453
Ubiquitin system [BR:
pop04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
SINA (Seven in absentia) proteins
18106453
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sina_ZnF
Sina_RING
Nop14
CDC45
Motif
Other DBs
NCBI-GeneID:
18106453
NCBI-ProteinID:
XP_006372377
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Position
17:complement(14726743..14729671)
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AA seq
416 aa
AA seq
DB search
MQIKINTLQREMAKFSLEDGEGSSFPRPKRQRPSSPSSPPPDFTMGEIVREDEESEEDEE
EDDVDTSDGSEEEDEEEEEEEEQVEEIVRPQPPPPQRQPQPPPPPPPPPQQQQQPPPPRP
QENNQITTVGLQPPQHRLFEASVFLGHTLVGPSRNGVIYATLSDPEVLDCPICCEPLTIP
VFQCDNGHTACSSCCIKLQHKCPSCTMPIGYNRCRAIEKVLESLKVSCSNSSYGCKESIC
YSKKYEHDKSCTHAPCTCPLPACNYQGSSKRLYQHCRIKHLCDLTSFQFNTSFPLFFMVD
HKFRVLQEEKEDVLFILTNRSECLGNVITVSCMGPSSSKQGYFYELTAKAEGSNVRFQSS
TRNIQTRVDHPPSLGFLLVPNDFLGTHGGITLDVCIWRLGSYPSVSSALGSSIQCK
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atgcaaataaaaatcaatactttgcagagagagatggcaaaattctcacttgaagatgga
gaagggtcaagctttccaaggccaaaaagacaaaggccctcttctccctcttctcctcct
cctgattttaccatgggagaaattgttcgcgaggatgaagaatctgaagaagatgaggaa
gaggacgatgtggacacaagtgatggaagtgaagaagaagatgaggaggaggaggaggag
gaggagcaggtggaagaaatagttagaccacaaccaccaccaccacaacgacaaccacaa
ccaccaccaccaccaccaccaccaccacaacaacaacaacaaccaccaccaccgcggccg
caagaaaataatcagataacaactgtgggactacagccaccacaacacagattatttgag
gcttcagtctttctaggacatacccttgtggggccaagcagaaatggggttatttatgca
actttatcagacccagaagttcttgattgtcccatctgctgtgaacccttgaccattcct
gtttttcagtgtgacaatggacatacagcttgctcttcatgctgcataaaacttcaacac
aagtgtccttcttgcactatgcctattggctataaccgctgtcgtgccattgagaaagtt
cttgaatcactgaaagtatcatgctccaatagtagttatgggtgcaaagaaagcatttgt
tacagtaagaaatacgaacatgataagagttgcacccatgctccatgtacatgccccctg
ccagcttgcaactaccagggctcatctaagcgtttgtaccaacattgtaggattaaacat
ttatgtgacttgacatctttccaatttaataccagcttccctcttttctttatggttgat
cacaaattccgtgttcttcaagaagagaaagaagatgttttattcattctgactaataga
tcggagtgtcttggaaatgtgatcactgttagttgtatggggccttcttcatcaaagcaa
ggatacttttatgaactcacagcaaaagcggagggaagcaatgtcagattccaatcttcc
actagaaatatccaaaccagagtcgatcaccctccatcactggggttccttctagtccca
aatgatttccttggtacccatggggggatcaccttggatgtctgcatatggcgtcttggc
tcatatccttctgtaagctctgcactaggcagctctatccaatgtaagtga
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