Populus trichocarpa (black cottonwood): 18106592
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Entry
18106592 CDS
T01077
Name
(RefSeq) PHD finger protein MALE MEIOCYTE DEATH 1 isoform X1
KO
K26271
PHD finger protein MS1/MMD1
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pop03000
]
18106592
Transcription factors [BR:
pop03000
]
Eukaryotic type
Zinc finger
Other zinc fingers
18106592
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GFIT
Motif
Pfam:
PHD
PHD_5
CLIP1_ZNF
PHD_2
Motif
Other DBs
NCBI-GeneID:
18106592
NCBI-ProteinID:
XP_006372523
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Position
17:complement(13693118..13697020)
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AA seq
702 aa
AA seq
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MSIPNLENCKKRKRWPKLYDFNTFCEPDCPINPRGPFRDNMRLFLQQCAEPEDYKVEGMS
IWCTLLVIESKNFVVPLYTIEEDVKESVRPFCDLCRCNGWSHNSVSKRKYHMIIPVDSEW
SQKLEDGVCDLQTHLLHGLIHCNGFGHLLCINGREGGSKYLCGREIMDLWDRICASLRTR
KITVEDVSKKRSMDLRLLYGIAYGHPWFGRWGYKFCHGSFGVTEPIYFKAIEILSSMELE
KIIQDFSDTSLSKSIKQIIHYYKDLSPTQLITFKDLLRFMLAIRSCPCVWKKQSMTATTT
SKPPINIVLRRKPLIKEKCMKYRNFSSLVGTMDSRWPTRRLQYAAEVIVDALKAKKEDKH
SQEGMTRQDVRDAARMHIGDTGLLDYVLKSMNNVVVGKYVVQRAVNPKTRILEYSIDEFG
DGIIPVKSEPESETVPAQPLLPGADVNADVVFVYENVLFNYPESELVEVATQAILDSKHF
VKEWPFRVENDQLLSFICQVMPTWNDLEAKFHRKAPPGEIIVLPLHASVLELKQEAESAL
RDTYCMLERFVVIEIEHMENLDDKDLLCKFVESGAEIFVKGYGMDINSQLRYEGGSDNWK
VRCECGACDDDGERMVECDICEVWQHTRCNGIDDADTVPQLFICSGCCDSLLPGKTETHQ
RFESSDDLLMIPAAIGYGAEAAEPFYEAIGYGAEAAEPFYQA
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atgtcaataccaaatcttgaaaattgcaagaaaaggaaaagatggccaaaactctacgat
ttcaacacattttgtgaaccggattgccccattaatcctaggggtcctttccgcgataac
atgcggctttttcttcaacaatgtgcagaacctgaagattataaagtagagggcatgtcc
atttggtgtactttgcttgttattgaaagtaaaaactttgttgttccactttacaccatt
gaagaagatgttaaggagtcagttagacccttttgtgatctgtgcagatgcaacggttgg
agtcacaattctgtttccaaaagaaagtatcatatgataataccagttgatagcgagtgg
agtcagaaattggaggatggcgtttgtgatctacagacacatctcttgcatgggttgatt
cactgtaatggttttggtcatttactatgcataaatgggagagaagggggttccaagtat
ctttgtggccgggaaatcatggatctttgggatcgtatttgtgcaagtcttcgaactagg
aaaatcactgttgaggatgtatcaaagaagcggtccatggatcttcgccttctttatggg
attgcatatggacatccatggtttggtagatggggatacaagttttgccatggaagcttt
ggtgtgacagagcccatatacttcaaagcaattgaaattctgagctctatggaacttgag
aagatcattcaagatttcagtgacacgagcctaagcaaaagcataaagcagataattcac
tactacaaagacctgagtccaacccagctgatcacattcaaagatcttcttcgtttcatg
cttgccatcagatcctgtccctgtgtatggaagaaacaaagcatgactgccaccaccact
tcaaagcctcctatcaatattgttctccggagaaagccactcataaaggagaaatgtatg
aagtacagaaattttagctcgttggttggtacaatggacagcagatggcctacaagaaga
ctgcaatatgcagctgaagtgattgtggatgcattgaaagcaaagaaggaggacaaacac
agtcaagaaggaatgactagacaagacgtgagagatgcagctcgaatgcacattggtgat
acaggcttgcttgattatgttctgaaatcaatgaacaatgtggttgttggaaagtatgtt
gtccagcgggcagttaacccaaaaacaaggattcttgaatactcaattgacgagtttggc
gacgggattatccctgtcaagtctgaaccagaatctgaaacagttccggcacaacctctt
ttgcctggagctgatgttaatgctgatgtggtctttgtatacgagaatgtgctgtttaac
tacccagaatcagaattggttgaagtagcaactcaggcaattctagacagcaagcatttt
gtgaaggagtggccttttagggttgagaatgaccagctgttgagtttcatatgccaagtg
atgccaacttggaatgatcttgaagctaaatttcacaggaaagctcctcctggcgagatt
atcgtgcttccattgcatgcttctgtgctggaactaaagcaagaagcagaaagtgcattg
cgagacacatactgcatgctggagaggtttgttgttatagagatagaacacatggaaaac
ctagatgataaggacttgctgtgtaaatttgtcgaatccggtgcagagatttttgtgaaa
gggtatggcatggacataaattctcagttgaggtatgaaggtgggtcagataactggaaa
gtaagatgtgaatgtggggcttgtgacgatgatggggagagaatggtagaatgtgacatt
tgtgaggtgtggcaacacacacgctgcaatggaattgatgatgctgatacagtaccacaa
ttgttcatttgttctggatgctgtgattctctactgccagggaaaactgaaactcaccag
agatttgagagttctgatgatttgttgatgattcctgcagcaattggatatggagcagag
gctgcagagcctttttacgaagcaattggatatggagcagaggctgcagagcctttttac
caagcttga
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