Populus trichocarpa (black cottonwood): 18108096
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Entry
18108096 CDS
T01077
Name
(RefSeq) autophagy-related protein 13b
KO
K08331
autophagy-related protein 13
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04136
Autophagy - other
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09140 Cellular Processes
09141 Transport and catabolism
04136 Autophagy - other
18108096
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pop04131
]
18108096
03029 Mitochondrial biogenesis [BR:
pop03029
]
18108096
Membrane trafficking [BR:
pop04131
]
Autophagy
Autophagosome formation proteins
ULK complex
18108096
Atg1 complex
18108096
Mitochondrial biogenesis [BR:
pop03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
18108096
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG13
Motif
Other DBs
NCBI-GeneID:
18108096
NCBI-ProteinID:
XP_052305554
LinkDB
All DBs
Position
19:1524624..1529210
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AA seq
615 aa
AA seq
DB search
MASSNNSTHTEAAEMEQIITEFFPKSLQIILESRSPFMSSRNYSGEQMVSLSPSSSSSSS
PSVRPRDKWFNLALRECPAALENLDLWHQSYLEPMIVDVILVQVPPVRWDPVNYPPQREP
VRNFSTKDQYPFHWNSDQEELGCEGKIEKIVERWEVQYEGRKSRDSGTGSRKLSNTFQTC
YMKSILLFRSLYATVRLLPAYKIFRDLNSSGKIRSYTLTHRVSSFVEPFTREEEAEMQRF
VFTPVDTSCGRLCLSVLYHSSLSDVSSESSTPVSPQFIPDYVGSPLAEPVKRFPSLPVSQ
GSLLSLPFSRQHSWYYDHNKASPPSFSFSPSPNRSGKHGSISNPSSCRFQPSSLPPHPPE
VPSVHKKNTSFDEHYPSPSYTPSPSPSPPIYIPESHLSTAVSQSESAPVSIPATKHASSP
LLSNKQNLPPSPPLKATTSCNPKTDESTGLVHPGATDEKLFSPRKDDIRKYASVKTLSNS
SQQISFSRTSSRPETFDKKGHLSDPLEPGGLFPIKKSQDAAVGALVHTLKKPPTLCQDFS
GSAALPPDSRSKMWSCNLQEYNPISVAPAGQQAAVSGVASSGLIASKTAADALEELKRYE
EMKDLLLSQAGRSNA
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atggcatcatcaaataatagtacacacactgaggctgcagagatggaacaaattatcact
gaattttttcctaagagtcttcagattatacttgagtcgaggtctcctttcatgtcatcg
cgtaattatagtggtgaacaaatggtatccttatctccatcttcttcgtcctcctcctcg
ccgagtgtgaggccaagagataaatggttcaatttagctcttagggaatgcccggctgct
cttgagaatcttgatctttggcaccaaagctatttggaaccgatgattgttgatgtgatt
ttggtgcaggtgccaccagttcggtgggatcctgtgaattatcccccccaaagggagcct
gttaggaatttttcgaccaaggatcagtatccatttcactggaattcagatcaggaagaa
ttagggtgtgagggtaagattgaaaagattgtagagaggtgggaagtgcagtatgagggt
cggaagtcaagggatagtggtactgggagcaggaaacttagcaatacctttcaaacatgt
tatatgaaatcaatattacttttcaggtctttgtatgcaactgttaggcttttacctgca
tataaaattttccgtgacctcaattcatcagggaaaattcgttcatacacgcttacacat
agggtgtcttcttttgttgagccctttacacgcgaagaagaggctgaaatgcagcgattt
gtgttcaccccagtggatacttcctgtggtaggctttgcctttcggtgctgtatcactct
tcattatcagatgtcagctctgagtcgtcaactcctgtgtccccccaatttatcccagat
tatgttgggagtcctttggcagaaccagtgaagagattcccctctcttcctgtgtcgcaa
ggttctctgttatctttgccattctcaagacaacatagttggtactatgaccataataaa
gcctcaccaccttcattttctttctcaccatcacctaatcgctcaggaaagcatggatca
atatctaatcctagttcctgtcgattccaaccttcgagcttgcctcctcatccacctgaa
gtgccttcagttcataagaagaatacgagctttgatgaacattatccctctcctagctat
acaccatctccatccccatcaccaccaatctatattcctgagagtcatctttccacagct
gtttcacaatctgaaagtgcacctgttagcatacctgctaccaagcatgctagttctccc
ctgttgtccaacaagcaaaacttgcccccatctccaccactcaaagctaccacatcttgc
aatccgaagactgatgaaagtacaggtttggttcaccctggtgcaacagacgagaagttg
ttctctcctcggaaagatgacattagaaaatatgccagcgtgaaaacactatccaacagc
tctcagcagatttcattttccagaacttccagcagacctgagacatttgataaaaaaggc
catctatctgacccccttgagcccggaggtctctttccgattaaaaaatcccaagatgca
gctgttggtgctcttgtacacacgctgaagaaacccccaactttatgccaagacttctct
ggttcggctgctttgccaccagattctaggtccaaaatgtggagctgcaacctccaagaa
tacaatccaatctctgtagcaccagcgggtcagcaggctgctgtgtctggtgttgcatct
tcaggtctcattgcttcaaaaacagcagctgatgcattggaagaactgaaaagatacgaa
gaaatgaaagacttgttgcttagccaagctggcaggtccaacgcttaa
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